CATH Domain: 3f62B00 XML data for domain: 3f62B00

Molscript image for 3f62B00
3f62B00
PDB coordinates for domain 3f62B00

PDB 3f62, Chain B, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.80 Trefoil
2.80.10 Trefoil (Acidic Fibroblast Growth Factor, subunit A)
2.80.10.50 Gene3D
2.80.10.50.10
2.80.10.50.10.1
2.80.10.50.10.1.1
2.80.10.50.10.1.1.2
2.80.10.50.10.1.1.2.1

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Segment boundaries for domain 3f62B00

Chopping figure for domain 3f62B00
DomainStart PDB ResidueStop PDB Residue
3f62B00 0 156

Structural Neighbourhood (17 entries)

There are 17 matching structural neighberhood comparisons for CATH ID 2.80.10.50.10.1.1.2.1 (SIMAX score < 5)

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Displaying entries 1 to 17 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1md6A00 85.49 Mus musculusInterleukin-1 family member 5Interleukin 1 family, member 5 (delta) 2.80.10.50 154 15 92 3.58 3.85
1upsA02 84.03 Clostridium perfringensGlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosidase 2.80.10.50 133 12 81 2.48 3.05
2fdbN00 83.75 Type 2 fibroblast growth factor receptor bindingMesonephros developmentPositive regulation of cell proliferationType 1 fibroblast growth factor receptor bindingExtracellular space 2.80.10.50 148 8 85 2.54 2.98
1q1uA00 83.73 Pathways in cancerMAPK signaling pathwayMelanomaRegulation of actin cytoskeletonFibroblast growth factor 12 2.80.10.50 138 10 82 2.29 2.77
1jlxA01 82.24 Amaranthus caudatusAgglutinin 2.80.10.50 159 11 88 3.44 3.88
1ihkA00 82.17 Pathways in cancerMelanomaMAPK signaling pathwayRegulation of actin cytoskeletonGlia-activating factor 2.80.10.50 157 9 83 3.80 4.55
1jlxA02 82.16 Amaranthus caudatusAgglutinin 2.80.10.50 140 8 85 2.94 3.45
1n4kA01 82.03 MicrosomeVoluntary musculoskeletal movementNucleolusPhosphoinositide bindingSarcoplasmic reticulum 2.80.10.50 141 7 78 2.38 3.04
1dfcA03 81.80 FascinActin cytoskeletonActin filament bundle assemblyHomo sapiensCell proliferation 2.80.10.50 123 10 76 2.62 3.41
1m2tB02 81.32 Beta-galactoside-specific lectin 1Viscum album 2.80.10.50 124 12 76 2.70 3.54
1dfcA02 81.24 FascinActin cytoskeletonActin filament bundle assemblyHomo sapiensCell proliferation 2.80.10.50 123 8 75 2.26 2.99
1vclA01 80.82 Cucumaria echinataHemolytic lectin CEL-III 2.80.10.50 149 10 85 3.95 4.60
1dfcA01 80.80 FascinActin cytoskeletonActin filament bundle assemblyHomo sapiensCell proliferation 2.80.10.50 122 10 74 2.26 3.04
1vclA02 80.74 Cucumaria echinataHemolytic lectin CEL-III 2.80.10.50 134 11 80 3.02 3.74
1dqgA00 78.94 Mus musculusMacrophage mannose receptor 1Mannose bindingCell surfaceTransmembrane receptor activity 2.80.10.50 134 8 76 3.25 4.26
1dfcA04 78.43 FascinActin cytoskeletonActin filament bundle assemblyHomo sapiensCell proliferation 2.80.10.50 107 14 67 2.20 3.27
1hcdA00 76.85 Membrane fractionPlasma membraneActin filament bindingHisactophilin-1Cytosol 2.80.10.50 118 10 75 3.13 4.17
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Displaying entries 1 to 17 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|3f62B00
GYFGKLESKLSVIRNLNDQVLFIDQGNRPLFEDAPRTIFIISMYKDSQPRGMAVTISVKSEKISTLSSENKIISFKEMNP
PDNIKDTKSDIIFFQRSVPGHDNKMQFESSSYEGYFLASEKLFKLILKKEDELGDRSIMFTVQNE
BLAST against CATH

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Domain COMBS Sequence 

>pdb|3f62B00
GYFGKLESKLSVIRNLNDQVLFIDQGNRPLFEDMTDSDSRDNAPRTIFIISMYKDSQPRGMAVTISVKSEKISTLSSENK
IISFKEMNPPDNIKDTKSDIIFFQRSVPGHDNKMQFESSSYEGYFLASEKERDLFKLILKKEDELGDRSIMFTVQNED
BLAST against CATH

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Domain History Events (6)

Domain assigned by auto on 11 Jan 2009 15:17

Assigning to "2.80.10.50" based on similarity with "1j0sA00"

Flow stage update by auto on 11 Jan 2009 14:42

No in_process hits for Domain "3f62B00" ready to be processed

Flow stage update by auto on 11 Jan 2009 14:42

NW result present for Domain "3f62B00"

Flow stage update by auto on 10 Jan 2009 14:28

All required files are present for Domain "3f62B00"

Flow stage update by auto on 09 Jan 2009 11:38

Beginning processing for Domain "3f62B00"

Insertion by auto on 09 Jan 2009 11:12

Final ChopClose added based on similarity with "1j0sA"