CATH Domain: 3edfA03 XML data for domain: 3edfA03

Molscript image for 3edfA03
3edfA03
PDB coordinates for domain 3edfA03

PDB 3edf, Chain A, Domain 3

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.60 Sandwich
2.60.40 Immunoglobulin-like
2.60.40.1180 Golgi alpha-mannosidase II Gene3D
2.60.40.1180.13
2.60.40.1180.13.1
2.60.40.1180.13.1.1
2.60.40.1180.13.1.1.1
2.60.40.1180.13.1.1.1.1

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Segment boundaries for domain 3edfA03

Chopping figure for domain 3edfA03
DomainStart PDB ResidueStop PDB Residue
3edfA01 3 92
3edfA02 99 517
3edfA03 518 597

Structural Neighbourhood (17 entries)

There are 17 matching structural neighberhood comparisons for CATH ID 2.60.40.1180.13.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 17 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1wzlA04 87.99 Neopullulanase 2Thermoactinomyces vulgaris 2.60.40.1180 83 17 90 1.88 2.08
1j0hA04 86.11 NeopullulanaseGeobacillus stearothermophilus 2.60.40.1180 83 17 91 2.74 2.99
1zjaA03 85.86 Pseudomonas mesoacidophilaSucrose isomerase 2.60.40.1180 78 11 91 2.58 2.83
1uokA03 85.75 Bacillus cereusOligo-1,6-glucosidase 2.60.40.1180 78 11 93 2.53 2.70
1ea9C04 84.70 Bacillus sp.Cyclomaltodextrinase 2.60.40.1180 81 17 92 2.50 2.70
1iv8A05 84.37 Sulfolobus acidocaldariusGlycosyltrehalose-producing enzyme 2.60.40.1180 66 16 81 2.15 2.65
1ua7A02 84.16 Starch and sucrose metabolismBacillus subtilisAlpha-amylaseAlpha-amylase [EC:3.2.1.1]Metabolic pathways 2.60.40.1180 78 11 90 2.75 3.06
1gjwA02 82.45 Thermotoga maritimaMaltodextrin glycosyltransferase 2.60.40.1180 68 11 77 2.44 3.15
3cc1A02 82.43 BH1870 proteinBacillus halodurans 2.60.40.1180 84 11 90 2.99 3.30
3clwC01 81.73 Bacteroides fragilis NCTC 9343Conserved hypothetical exported protein 2.60.40.1180 100 13 73 2.45 3.36
1lwjA03 80.58 4-alpha-glucanotransferase [EC:2.4.1.25]Thermotoga maritimaStarch and sucrose metabolism4-alpha-glucanotransferaseMetabolic pathways 2.60.40.1180 50 18 61 1.60 2.61
1eh9A02 78.39 Sulfolobus solfataricusMalto-oligosyltrehalose trehalohydrolase 2.60.40.1180 62 12 71 3.31 4.65
1m7xA03 78.18 Starch and sucrose metabolismMetabolic pathways1,4-alpha-glucan branching enzyme [EC:2.4.1.18]Glycogen biosynthetic process1,4-alpha-glucan-branching enzyme 2.60.40.1180 106 15 71 3.07 4.28
1bf2A03 77.52 Pseudomonas amyloderamosaIsoamylase 2.60.40.1180 114 13 65 2.98 4.53
1ht6A02 77.13 Alpha-amylase type A isozymeHordeum vulgare 2.60.40.1180 57 15 65 3.21 4.94
1kwgA03 76.66 Beta-galactosidaseThermus thermophilus 2.60.40.1180 50 20 62 2.82 4.51
1rwhA03 73.05 Chondroitinase (Chondroitin lyase)Arthrobacter aurescens 2.60.220.10 114 11 62 2.92 4.69
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Displaying entries 1 to 17 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|3edfA03
RLMHFGPEENTWVYFRYNKDKRIMVAMNNNDKPMTLPTARFQEMLKGAPSGVDFLSGKTVGLGRELRLAPKSVVVIELPG
BLAST against CATH

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Domain COMBS Sequence 

>pdb|3edfA03
RLMHFGPEENTWVYFRYNKDKRIMVAMNNNDKPMTLPTARFQEMLKGAPSGVDFLSGKTVGLGRELRLAPKSVVVIELPG
BLAST against CATH

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Domain History Events (6)

Domain assigned by auto on 09 Mar 2009 14:55

Assigning to "2.60.40.1180" based on similarity with "1h3gA03"

Flow stage update by auto on 09 Mar 2009 14:23

No in_process hits for Domain "3edfA03" ready to be processed

Flow stage update by auto on 09 Mar 2009 14:23

NW result present for Domain "3edfA03"

Flow stage update by auto on 08 Mar 2009 08:51

All required files are present for Domain "3edfA03"

Flow stage update by auto on 07 Mar 2009 21:41

Beginning processing for Domain "3edfA03"

Insertion by auto on 07 Mar 2009 20:17

Final ChopClose added based on similarity with "3eddA"