CATH Domain: 3dssB00 XML data for domain: 3dssB00

Molscript image for 3dssB00
3dssB00
PDB coordinates for domain 3dssB00

PDB 3dss, Chain B, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.50 Alpha/alpha barrel
1.50.10 Glycosyltransferase
1.50.10.20 Gene3D
1.50.10.20.2
1.50.10.20.2.1
1.50.10.20.2.1.1
1.50.10.20.2.1.1.1
1.50.10.20.2.1.1.1.1

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Segment boundaries for domain 3dssB00

Chopping figure for domain 3dssB00
DomainStart PDB ResidueStop PDB Residue
3dssB00 5 331

Structural Neighbourhood (2 entries)

There are 2 matching structural neighberhood comparisons for CATH ID 1.50.10.20.2.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 2 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1n4qB00 87.65 CAAX-protein geranylgeranyltransferase activityResponse to cytokine stimulusRattus norvegicusPositive regulation of cell proliferationResponse to protein stimulus 1.50.10.20 346 28 89 3.49 3.91
2h6fB00 84.26 Protein farnesyltransferase subunit betaMicrotubule associated complexProtein farnesyltransferase subunit beta [EC:2.5.1.58]Homo sapiensProtein binding 1.50.10.20 410 29 78 3.79 4.83
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Displaying entries 1 to 2 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|3dssB00
QKDVTIKSDAPDTLLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEILVFIKSCQHECGG
VSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINV
EKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWW
VLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLGEEQIKPVSPVFCMPEEVLQRVN
VQPELVS
BLAST against CATH

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Domain COMBS Sequence 

>pdb|3dssB00
MGTQQKDVTIKSDAPDTLLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEILVFIKSCQH
ECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLD
AINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVC
YSWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLGEEQIKPVSPVFCMPEEVL
QRVNVQPELVS
BLAST against CATH

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Domain History Events (8)

Domain assigned by auto on 15 Sep 2008 21:56

Assigning to "1.50.10.20" based on similarity with "1dceB00"

Flow stage update by auto on 15 Sep 2008 21:55

No in_process hits for Domain "3dssB00" ready to be processed

Update comment by auto on 15 Sep 2008 21:51

Domain "3dssB00" hits Domain "3dswB00" (100% over 100%) which is currently in process

Flow stage update by auto on 15 Sep 2008 21:40

Domain "3dssB00" hits Domain "3dswB00" (100% over 100%) which is currently in process

Flow stage update by auto on 15 Sep 2008 21:40

NW result present for Domain "3dssB00"

Flow stage update by auto on 13 Sep 2008 08:31

All required files are present for Domain "3dssB00"

Flow stage update by auto on 12 Sep 2008 14:46

Beginning processing for Domain "3dssB00"

Insertion by auto on 12 Sep 2008 14:15

Final ChopClose added based on similarity with "1dceB"