CATH Domain: 3dgbA02 XML data for domain: 3dgbA02

Molscript image for 3dgbA02
3dgbA02
PDB coordinates for domain 3dgbA02

PDB 3dgb, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.20 Alpha-Beta Barrel
3.20.20 TIM Barrel
3.20.20.120 Enolase superfamily Gene3D
3.20.20.120.5
3.20.20.120.5.1
3.20.20.120.5.1.1
3.20.20.120.5.1.1.1
3.20.20.120.5.1.1.1.1

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Segment boundaries for domain 3dgbA02

Chopping figure for domain 3dgbA02
DomainStart PDB ResidueStop PDB Residue
3dgbA01 4 123
3dgbA01 360 373
3dgbA02 124 359

Structural Neighbourhood (33 entries)

There are 33 matching structural neighberhood comparisons for CATH ID 3.20.20.120.5.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 33 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2chrA02 90.92 Ralstonia eutropha JMP134Chloromuconate cycloisomeraseToluene and xylene degradationMuconate cycloisomerase [EC:5.5.1.1]Benzoate degradation via hydroxylation 3.20.20.120 202 46 85 0.83 0.97
1tkkA02 88.76 Bacillus subtilisL-Ala-D/L-Glu epimerase 3.20.20.120 244 28 95 1.60 1.68
2oqyA02 87.63 Muconate cycloisomeraseOceanobacillus iheyensis 3.20.20.120 226 21 92 1.90 2.05
2qdeA02 86.72 Aromatoleum aromaticum EbN1Mandelate racemase/muconate lactonizing enzyme family protein 3.20.20.120 239 28 94 1.66 1.75
2qddA02 86.64 Mandelate racemase/muconate lactonizing enzyme, putativeRoseovarius nubinhibens ISM 3.20.20.120 236 22 96 2.19 2.27
2pmqA02 86.61 Roseovarius sp. HTCC2601Mandelate racemase/muconate lactonizing enzyme 3.20.20.120 224 19 94 2.02 2.14
2oqhA02 86.58 Putative isomeraseStreptomyces coelicolor 3.20.20.120 240 27 93 1.83 1.96
2pgwA02 86.55 Sinorhizobium melilotiToluene and xylene degradationBenzoate degradation via hydroxylationMuconate cycloisomerase [EC:5.5.1.1]Mandelate racemase/muconate lactonizing enzyme family protein 3.20.20.120 215 27 90 1.68 1.85
3cb3A02 86.47 Toluene and xylene degradationPolaromonas sp. JS666Mandelate racemase [EC:5.1.2.2]Mandelate racemase/muconate lactonizing enzymeBenzoate degradation via hydroxylation 3.20.20.120 233 25 94 2.23 2.35
2qvhA02 86.44 Ubiquinone and other terpenoid-quinone biosynthesisThermobifida fusca YXO-succinylbenzoate-CoA synthaseO-succinylbenzoate synthase [EC:4.2.1.113]Metabolic pathways 3.20.20.120 224 28 93 2.36 2.52
2zadA02 86.36 Thermotoga maritimaL-Ala-D/L-Glu epimerase 3.20.20.120 222 27 93 2.04 2.19
3fv9A02 85.39 Mandelate racemase/muconate lactonizing enzyme, putativeRoseovarius nubinhibens ISM 3.20.20.120 243 23 95 2.28 2.38
1jpdX02 85.36 Racemase and epimerase activity, acting on amino acids and derivativesL-Ala-D/L-Glu epimeraseEscherichia coli K-12 3.20.20.120 207 25 87 2.20 2.51
2ovlA02 85.26 Toluene and xylene degradationStreptomyces coelicolorMandelate racemase [EC:5.1.2.2]Benzoate degradation via hydroxylationPutative racemase 3.20.20.120 223 24 91 1.86 2.04
1mdlA02 84.93 Mandelate racemasePseudomonas putida 3.20.20.120 230 21 94 1.99 2.12
2pozH02 84.45 Putative dehydrataseMesorhizobium loti 3.20.20.120 246 18 91 1.85 2.01
2qq6A02 84.39 Rubrobacter xylanophilus DSM 9941Mandelate racemase/muconate lactonizing enzyme-like protein 3.20.20.120 262 23 86 1.91 2.21
1ec7A02 84.38 Ascorbate and aldarate metabolismD-glucarate catabolic processGlucarate dehydratase activityGlucarate dehydrataseGlucarate dehydratase [EC:4.2.1.40] 3.20.20.120 261 13 86 1.92 2.23
2oz8A02 84.36 Mesorhizobium lotiMll7089 protein 3.20.20.120 230 20 92 2.30 2.48
3bjsA02 84.03 Polaromonas sp. JS666Mandelate racemase/muconate lactonizing enzyme 3.20.20.120 250 22 91 2.17 2.38
1rvkA02 83.97 Agrobacterium tumefaciens str. C58Isomerase/lactonizing enzyme 3.20.20.120 255 20 86 2.11 2.43
3cyjA02 83.56 Rubrobacter xylanophilus DSM 9941Mandelate racemase/muconate lactonizing enzyme-like proteinToluene and xylene degradationMandelate racemase [EC:5.1.2.2]Benzoate degradation via hydroxylation 3.20.20.120 235 21 94 2.20 2.34
2nqlA02 83.16 Agrobacterium tumefaciens str. C58Isomerase/lactonizing enzyme 3.20.20.120 214 19 89 2.07 2.30
2qgyA02 82.84 3.20.20.120 231 17 95 2.83 2.96
2oztA02 82.71 Ubiquinone and other terpenoid-quinone biosynthesisThermosynechococcus elongatus BP-1O-succinylbenzoate synthase [EC:4.2.1.113]Tlr1174 proteinMetabolic pathways 3.20.20.120 201 22 83 2.48 2.99
2hzgA02 82.70 Rhodobacter sphaeroides 2.4.1Mandelate racemase/muconate lactonizing enzyme/Enolase superfamily 3.20.20.120 248 20 93 2.40 2.57
2podB02 82.69 Mandelate racemase / muconate lactonizing enzymeBurkholderia pseudomallei 3.20.20.120 251 22 90 2.37 2.61
1yeyB02 82.26 Xanthomonas campestris pv. campestrisRTS beta protein 3.20.20.120 243 20 87 2.09 2.38
3go2A02 82.13 Burkholderia xenovorans LB400Putative uncharacterized protein 3.20.20.120 268 22 84 2.23 2.63
3cawA02 81.45 Ubiquinone and other terpenoid-quinone biosynthesisO-succinylbenzoate synthase [EC:4.2.1.113]Bdellovibrio bacteriovorusMetabolic pathwaysPutative uncharacterized protein 3.20.20.120 225 13 91 2.94 3.21
1r6wA01 81.35 Ubiquinone and other terpenoid-quinone biosynthesisMetabolic pathwaysMenaquinone biosynthetic processO-succinylbenzoate synthaseHydro-lyase activity 3.20.20.120 198 18 82 3.06 3.70
1tzzA02 81.18 Bradyrhizobium japonicumBll6730 protein 3.20.20.120 256 18 88 2.70 3.06
2oktA02 79.07 Ubiquinone and other terpenoid-quinone biosynthesisMetabolic pathwaysO-succinylbenzoic acid (OSB) synthetase, putativeStaphylococcus aureus subsp. aureus COLO-succinylbenzoate synthase [EC:4.2.1.113] 3.20.20.120 189 18 80 2.66 3.32
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Displaying entries 1 to 33 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|3dgbA02
LPVSELLGGRVRDALPVAWTLASGDTAKDIAEAQKMLDLRRHRIFKLKIGAGEVDRDLAHVIAIKKALGDSASVRVDVNQ
AWDEAVALRACRILGGNGIDLIEQPISRNNRAGMVRLNASSPAPIMADESIECVEDAFNLAREGAASVFALKIAKNGGPR
ATLRTAAIAEAAGIGLYGGTMLEGGIGTLASAHAFLTLNKLSWDTELFGPLLLTEDILAEPPVYRDFHLHVSKAPG
BLAST against CATH

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Domain COMBS Sequence 

>pdb|3dgbA02
LPVSELLGGRVRDALPVAWTLASGDTAKDIAEAQKMLDLRRHRIFKLKIGAGEVDRDLAHVIAIKKALGDSASVRVDVNQ
AWDEAVALRACRILGGNGIDLIEQPISRNNRAGMVRLNASSPAPIMADESIECVEDAFNLAREGAASVFALKIAKNGGPR
ATLRTAAIAEAAGIGLYGGTMLEGGIGTLASAHAFLTLNKLSWDTELFGPLLLTEDILAEPPVYRDFHLHVSKAPG
BLAST against CATH

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Domain History Events (6)

Domain assigned by auto on 09 Mar 2009 14:55

Assigning to "3.20.20.120" based on similarity with "3ct2A02"

Flow stage update by auto on 09 Mar 2009 14:23

No in_process hits for Domain "3dgbA02" ready to be processed

Flow stage update by auto on 09 Mar 2009 14:23

NW result present for Domain "3dgbA02"

Flow stage update by auto on 08 Mar 2009 08:51

All required files are present for Domain "3dgbA02"

Flow stage update by auto on 07 Mar 2009 17:35

Beginning processing for Domain "3dgbA02"

Insertion by auto on 07 Mar 2009 17:11

Final ChopClose added based on similarity with "3ct2A"