CATH Domain: 3covA01 XML data for domain: 3covA01

Molscript image for 3covA01
3covA01
PDB coordinates for domain 3covA01

PDB 3cov, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.620 Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1 Gene3D
3.40.50.620.5
3.40.50.620.5.1
3.40.50.620.5.1.1
3.40.50.620.5.1.1.1
3.40.50.620.5.1.1.1.1

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Segment boundaries for domain 3covA01

Chopping figure for domain 3covA01
DomainStart PDB ResidueStop PDB Residue
3covA01 3 185
3covA02 186 288

Structural Neighbourhood (5 entries)

There are 5 matching structural neighberhood comparisons for CATH ID 3.40.50.620.5.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 5 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2x0kA01 78.78 Riboflavin biosynthesis protein ribFCorynebacterium ammoniagenes 3.40.50.620 186 11 74 3.46 4.66
3glvA00 76.92 Thermoplasma volcanium GSS1Lipopolysaccharide core biosynthesis proteinGlycerophospholipid metabolismGlycerol-3-phosphate cytidylyltransferase [EC:2.7.7.39] 3.40.50.620 122 13 62 3.01 4.79
1kh1C01 75.17 Thermus thermophilus HB8Arginine and proline metabolismArgininosuccinate synthase [EC:6.3.4.5]Alanine, aspartate and glutamate metabolismArgininosuccinate synthase 3.40.50.620 136 5 61 2.85 4.66
1qtqA05 73.93 Aminoacyl-tRNA biosynthesisMetabolic pathwaysGlutaminyl-tRNA synthetaseGlutamine-tRNA ligase activityGlutaminyl-tRNA aminoacylation 3.40.50.620 123 6 59 2.50 4.24
1j09A01 73.76 Aminoacyl-tRNA biosynthesisThermus thermophilus HB8Porphyrin and chlorophyll metabolismGlutamyl-tRNA synthetase [EC:6.1.1.17]Glutamyl-tRNA synthetase 3.40.50.620 121 12 56 2.24 3.94
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Displaying entries 1 to 5 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|3covA01
IPAFHPGELNVYSAPGDVADVSRALRLTGRRVMLVPTMGALHEGHLALVRAAKRVPGSVVVVSIFVNPMQFGAGGDLDAY
PRTPDDDLAQLRAEGVEIAFTPTTAAMYPDGLRTTVQPGPLAAELEGGPRPTHFAGVLTVVLKLLQIVRPDRVFFGEKDY
QQLVLIRQLVADFNLDVAVVGVP
BLAST against CATH

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Domain COMBS Sequence 

>pdb|3covA01
AMAIPAFHPGELNVYSAPGDVADVSRALRLTGRRVMLVPTMGALHEGHLALVRAAKRVPGSVVVVSIFVNPMQFGAGGDL
DAYPRTPDDDLAQLRAEGVEIAFTPTTAAMYPDGLRTTVQPGPLAAELEGGPRPTHFAGVLTVVLKLLQIVRPDRVFFGE
KDYQQLVLIRQLVADFNLDVAVVGVP
BLAST against CATH

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Domain History Events (8)

Domain assigned by auto on 13 Oct 2008 09:06

Assigning to "3.40.50.620" based on similarity with "3covB01"

Flow stage update by auto on 13 Oct 2008 09:06

No in_process hits for Domain "3covA01" ready to be processed

Update comment by auto on 13 Oct 2008 06:02

Domain "3covA01" hits Domain "3covB01" (100% over 100%) which is currently in process

Flow stage update by auto on 13 Oct 2008 05:28

Domain "3covA01" hits Domain "3covB01" (100% over 100%) which is currently in process

Flow stage update by auto on 13 Oct 2008 05:28

NW result present for Domain "3covA01"

Flow stage update by auto on 12 Oct 2008 08:44

All required files are present for Domain "3covA01"

Flow stage update by auto on 11 Oct 2008 08:41

Beginning processing for Domain "3covA01"

Insertion by auto on 11 Oct 2008 08:36

Final ChopClose added based on similarity with "1mopA"