CATH Domain: 3cnxA00 XML data for domain: 3cnxA00

Molscript image for 3cnxA00
3cnxA00
PDB coordinates for domain 3cnxA00

PDB 3cnx, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.10 Roll
3.10.450 Nuclear Transport Factor 2; Chain: A,
3.10.450.50 Gene3D
3.10.450.50.19
3.10.450.50.19.1
3.10.450.50.19.1.1
3.10.450.50.19.1.1.1
3.10.450.50.19.1.1.1.1

Segment boundaries for domain 3cnxA00

Chopping figure for domain 3cnxA00
DomainStart PDB ResidueStop PDB Residue
3cnxA00 5 157

Structural Neighbourhood (12 entries)

There are 12 matching structural neighberhood comparisons for CATH ID 3.10.450.50.19.1.1.1.1 (SIMAX score < 5)

Displaying entries 1 to 12 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2ux0B00 86.48 Calcium/calmodulin-dependent protein kinase type II subunit gammaHomo sapiensCalcium- and calmodulin-dependent protein kinase complex 3.10.450.50 136 15 88 2.31 2.60
2owpA00 86.07 Burkholderia xenovorans LB400Putative uncharacterized protein 3.10.450.50 124 19 85 2.44 2.84
1m98A02 84.85 Arthrospira maximaOrange carotenoid-binding protein 3.10.450.50 128 11 85 3.88 4.52
3bb9B00 83.88 Putative orphan proteinShewanella frigidimarina NCIMB 400 3.10.450.50 120 16 87 3.55 4.06
1of5B00 82.21 Nuclear poreNuclear RNA export factor complexMRNA transport regulator MTR2Ribosomal large subunit export from nucleusSaccharomyces cerevisiae 3.10.450.50 128 6 85 2.64 3.10
3cu3A00 80.49 Domain of unknown function with a cystatin-like foldNostoc punctiforme PCC 73102 3.10.450.50 160 13 76 3.15 4.10
1of5A00 79.45 Nuclear poreStructural constituent of nuclear poreRNA bindingMRNA export factor MEX67MRNA export from nucleus 3.10.450.50 154 9 78 3.73 4.75
2bmoB00 78.45 Oxygenase-beta NBDOComamonas sp. JS765Protein binding 3.10.450.50 194 7 63 2.67 4.18
1jkgB00 77.91 Nuclear RNA export factor 1Homo sapiensProtein binding 3.10.450.50 180 11 67 2.87 4.27
1q40D00 77.59 MRNA export factor MEX67Candida albicans 3.10.450.50 169 8 67 2.84 4.21
1q42A00 77.50 MRNA transport regulator MTR2Candida albicans 3.10.450.50 159 11 76 3.26 4.28
3b7cA00 77.45 Shewanella oneidensisPutative uncharacterized protein 3.10.450.50 115 10 80 3.59 4.45
Displaying entries 1 to 12 (page 1 of 1)


Domain ATOM Sequence

>pdb|3cnxA00
TPDTDVEQVGLANTAFYEAERGDFETLSSLWLTPADLGVPADAGVVSCVHPGWPVLSGRGEVLRSYALIANTEYIQFFLT
DVHVSVTGDTALVTCTENILSGGGPLVGQLVVATNVFRRTPDGWKLWSHHASPVLA    

Domain COMBS Sequence

>pdb|3cnxA00
GXSTPTPDTDVEQVGLANTAFYEAXERGDFETLSSLWLTPADLGVDEEYHDPADAGVVSCVHPGWPVLSGRGEVLRSYAL
IXANTEYIQFFLTDVHVSVTGDTALVTCTENILSGGPPPDDSDELGPLVGQLVVATNVFRRTPDGWKLWSHHASPVLAET
GAEEGDESPD    

Domain History Events (59)

Domain assigned by cuff on 01 Apr 2009 17:10

homology match

Domain assignment manual match h by cuff on 01 Apr 2009 17:08

homology match

Homcheck allotment by cuff on 01 Apr 2009 17:07

User 'cuff' has allocated a domain to themselves for HomChecking with comment : Grabbed this domain via HomCheck's "Get Me A Domain" button.

Flow stage update by cuff on 01 Apr 2009 17:07

User 'cuff' has allocated a domain to themselves for HomChecking with comment : Grabbed this domain via HomCheck's "Get Me A Domain" button.

Flow stage update by auto on 19 Mar 2009 19:28

Domain "3cnxA00" SCOP scan with no results - no SCOP mapping

Domain scan scop cath by auto on 19 Mar 2009 19:28

Adding scan of type "DOMAIN_SCAN_SCOP_CATH" with 0 results for 3cnxA00

Flow stage update by auto on 19 Mar 2009 16:55

Retrieved PRC_PFAMCATH results for job ID SID3726459766474320 and results inserted.

Domain scan prc pfamcath by auto on 19 Mar 2009 16:54

Adding scan of type "DOMAIN_SCAN_PRC_PFAMCATH" with 65 results for 3cnxA00

Update comment by auto on 09 Mar 2009 13:45

PRC_PFAMCATH job SID3726459766474320 is not yet finished.

Prc pfamcath submit by auto on 09 Mar 2009 13:25

The entry "3cnxA00" has been submitted to the PRC_PFAMCATH webservice.

Flow stage update by auto on 09 Mar 2009 13:25

The entry "3cnxA00" has been submitted to the PRC_PFAMCATH webservice.

Flow stage update by auto on 09 Mar 2009 13:17

Retrieved SSAP results for job ID SID4359613716874152 and results inserted.

Domain scan ssap cath by auto on 09 Mar 2009 13:14

Adding scan of type "DOMAIN_SCAN_SSAP_CATH" with 1853 results for 3cnxA00

Update comment by auto on 04 Mar 2009 09:25

SSAP job SID4359613716874152 is not yet finished.

Ssap cath submit by auto on 04 Mar 2009 09:08

The entry "3cnxA00" has been submitted to the SSAP webservice.

Flow stage update by auto on 04 Mar 2009 09:08

The entry "3cnxA00" has been submitted to the SSAP webservice.

Flow stage update by auto on 04 Mar 2009 08:41

Retrieved PRC results for job ID SID2881507027634748 and inserted them into the database.

Domain scan prc cath by auto on 04 Mar 2009 08:40

Adding scan of type "DOMAIN_SCAN_PRC_CATH" with 18 results for 3cnxA00

Flow stage update by auto on 04 Mar 2009 06:31

The entry "3cnxA00" has been submitted to the PRC webservice.

Prc cath submit by auto on 04 Mar 2009 06:31

The entry "3cnxA00" has been submitted to the PRC webservice.

Flow stage update by auto on 04 Mar 2009 05:48

Retrieved HMM(SAM) results for job ID SID6321168992542053 and inserted them into the database.

Domain scan sam cath by auto on 04 Mar 2009 05:47

Adding scan of type "DOMAIN_SCAN_SAM_CATH" with 6 results for 3cnxA00

Update comment by auto on 04 Mar 2009 01:24

HMM(SAM) job SID6321168992542053 is not yet finished.

Flow stage update by auto on 04 Mar 2009 00:00

The entry "3cnxA00" has been submitted to the HMM (SAM) webservice.

Sam cath submit by auto on 04 Mar 2009 00:00

The entry "3cnxA00" has been submitted to the HMM (SAM) webservice.

Flow stage update by auto on 19 Feb 2009 16:16

Unable to retrieve "3cnxA00" HMM(SAM) results for job "SID4989152054954784"

Update comment by auto on 19 Feb 2009 08:47

HMM(SAM) job SID4989152054954784 is not yet finished.

Sam cath submit by auto on 19 Feb 2009 08:23

The entry "3cnxA00" has been submitted to the HMM (SAM) webservice.

Flow stage update by auto on 19 Feb 2009 08:23

The entry "3cnxA00" has been submitted to the HMM (SAM) webservice.

Flow stage update by auto on 27 Jan 2009 12:27

Unable to retrieve "3cnxA00" HMM(SAM) results for job "SID8403089979241728"

Update comment by auto on 22 Jan 2009 17:56

HMM(SAM) job SID8403089979241728 is not yet finished.

Sam cath submit by auto on 22 Jan 2009 17:41

The entry "3cnxA00" has been submitted to the HMM (SAM) webservice.

Flow stage update by auto on 22 Jan 2009 17:41

The entry "3cnxA00" has been submitted to the HMM (SAM) webservice.

Flow stage update by auto on 04 Dec 2008 04:43

Retrieved "3cnxA00" CATHEDRAL results for job ID SID8128795587468224 and inserted them into the database.

Domain scan cathedral cath by auto on 04 Dec 2008 04:43

Adding scan of type "DOMAIN_SCAN_CATHEDRAL_CATH" with 49 results for 3cnxA00

Update comment by auto on 03 Dec 2008 23:47

"3cnxA00" CATHEDRAL job SID8128795587468224 is not yet finished.

Cathedral cath submit by auto on 03 Dec 2008 23:41

The entry "3cnxA00" has been submitted to the CATHEDRAL webservice.

Flow stage update by auto on 03 Dec 2008 23:41

The entry "3cnxA00" has been submitted to the CATHEDRAL webservice.

Flow stage update by auto on 03 Dec 2008 20:56

Unable to retrieve "3cnxA00" CATHEDRAL results for job "SID8748664577529701"

Cathedral cath submit by auto on 03 Dec 2008 20:51

The entry "3cnxA00" has been submitted to the CATHEDRAL webservice.

Flow stage update by auto on 03 Dec 2008 20:51

The entry "3cnxA00" has been submitted to the CATHEDRAL webservice.

Flow stage update by auto on 03 Dec 2008 17:53

Unable to retrieve "3cnxA00" CATHEDRAL results for job "SID8805365905000864"

Cathedral cath submit by auto on 03 Dec 2008 17:48

The entry "3cnxA00" has been submitted to the CATHEDRAL webservice.

Flow stage update by auto on 03 Dec 2008 17:48

The entry "3cnxA00" has been submitted to the CATHEDRAL webservice.

Flow stage update by auto on 03 Dec 2008 14:53

Unable to retrieve "3cnxA00" CATHEDRAL results for job "SID6645178303234312"

Cathedral cath submit by auto on 03 Dec 2008 14:45

The entry "3cnxA00" has been submitted to the CATHEDRAL webservice.

Flow stage update by auto on 03 Dec 2008 14:45

The entry "3cnxA00" has been submitted to the CATHEDRAL webservice.

Flow stage update by auto on 03 Dec 2008 10:44

Unable to retrieve "3cnxA00" CATHEDRAL results for job "SID6935239019848436"

Update comment by auto on 03 Dec 2008 01:06

"3cnxA00" CATHEDRAL job SID6935239019848436 is not yet finished.

Cathedral cath submit by auto on 03 Dec 2008 00:35

The entry "3cnxA00" has been submitted to the CATHEDRAL webservice.

Flow stage update by auto on 03 Dec 2008 00:35

The entry "3cnxA00" has been submitted to the CATHEDRAL webservice.

Flow stage update by auto on 03 Dec 2008 00:04

ScanList with 12545 domains written to "/cath/data/current/scanlists/cathdb_current.fletcher/3cnxA00.scanlist" for "3cnxA00"

Write scan list by auto on 03 Dec 2008 00:04

Writing ScanList containing 12545 domains to file "/cath/data/current/scanlists/cathdb_current.fletcher/3cnxA00.scanlist" for domain "3cnxA00"

Flow stage update by auto on 02 Dec 2008 23:28

No satisfactory AssignClose result found.

Flow stage update by auto on 02 Dec 2008 23:09

No in_process hits for Domain "3cnxA00" ready to be processed

Flow stage update by auto on 02 Dec 2008 23:09

NW result present for Domain "3cnxA00"

Flow stage update by auto on 02 Dec 2008 11:08

All required files are present for Domain "3cnxA00"

Flow stage update by auto on 01 Dec 2008 17:53

Beginning processing for Domain "3cnxA00"

Insertion by cuff on 01 Dec 2008 16:41

nice chopping