CATH Domain: 3cj8C02 XML data for domain: 3cj8C02

Molscript image for 3cj8C02
3cj8C02
PDB coordinates for domain 3cj8C02

PDB 3cj8, Chain C, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.70 Alpha-Beta Plaits
3.30.70.250 Gene3D
3.30.70.250.3
3.30.70.250.3.1
3.30.70.250.3.1.1
3.30.70.250.3.1.1.1
3.30.70.250.3.1.1.1.2

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Segment boundaries for domain 3cj8C02

Chopping figure for domain 3cj8C02
DomainStart PDB ResidueStop PDB Residue
3cj8C01 -1 13
3cj8C02 14 79
3cj8C03 80 217

Structural Neighbourhood (26 entries)

There are 26 matching structural neighberhood comparisons for CATH ID 3.30.70.250.3.1.1.1.2 (SIMAX score < 5)

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Displaying entries 1 to 26 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
3bv8A00 85.97 Lysine biosynthesisMetabolic pathways2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferaseTetrahydrodipicolinate N-acetyltransferase [EC:2.3.1.89]2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase [EC:2.3.1.117] 3.30.70.250 84 34 78 2.60 3.31
1s99A01 82.07 Bacillus subtilisPutative HMP/thiamine-binding protein ykoF 3.30.70.930 77 9 76 3.14 4.10
1in0A01 79.36 Hypothetical proteinHaemophilus influenzaeUPF0234 protein HI_1034 3.30.70.860 70 7 77 2.79 3.62
2fgcA03 79.19 Butanoate metabolismC5-Branched dibasic acid metabolismPantothenate and CoA biosynthesisValine, leucine and isoleucine biosynthesisMetabolic pathways 3.30.70.1150 74 7 83 3.17 3.78
2f1fA01 78.73 Valine, leucine and isoleucine biosynthesisMetabolic pathwaysButanoate metabolismC5-Branched dibasic acid metabolismPantothenate and CoA biosynthesis 3.30.70.260 79 6 73 3.42 4.66
1kn6A00 78.69 Mus musculusPeptide hormone processingSerine-type endopeptidase activityNeuroendocrine convertase 1Proprotein convertase subtilisin/kexin type 1 [EC:3.4.21.93] 3.30.70.850 73 1 75 3.06 4.06
1no8A00 78.53 THO complex subunit 4Mus musculusSpliceosomeSingle-stranded DNA bindingRNA binding 3.30.70.330 78 12 70 3.23 4.58
1q5yD00 78.41 CopG family transcriptional regulator, nickel-responsive regulatorNickel-responsive regulatorProtein bindingEscherichia coli K-12 3.30.70.1150 80 13 72 3.00 4.14
2axyA00 78.14 Poly(rC)-binding protein 2CytoplasmRNA bindingHomo sapiensProtein binding 3.30.1370.10 69 9 75 3.61 4.79
1vr6A01 78.12 Phenylalanine, tyrosine and tryptophan biosynthesisMetabolic pathwaysThermotoga maritima3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]Phospho-2-dehydro-3-deoxyheptonate aldolase 3.30.70.1140 75 12 80 3.09 3.86
1vjqA00 77.89 3.30.70.340 71 12 81 4.03 4.93
2nzcA00 77.03 Thermotoga maritimaPutative uncharacterized protein 3.30.70.1150 77 9 70 2.78 3.96
2do0A01 76.63 Protein domain specific bindingIntegral to plasma membraneParaspecklesAlternative nuclear mRNA splicing, via spliceosomeHeterogeneous nuclear ribonucleoprotein M 3.30.70.330 76 6 69 3.31 4.75
1bxyA00 76.57 RibosomeLarge subunit ribosomal protein L30Thermus thermophilus50S ribosomal protein L30 3.30.1390.20 60 8 80 3.89 4.84
2fb0A00 76.44 Bacteroides thetaiotaomicronPutative uncharacterized protein 3.30.70.900 91 6 63 2.91 4.57
1cvjA01 76.42 Poly(A) RNA bindingTranslation activator activityProtein C-terminus bindingMRNA polyadenylationPolyadenylate-binding protein 1 3.30.70.330 77 6 68 3.31 4.81
1u7lA01 76.29 V-type H+-transporting ATPase subunit C [EC:3.6.3.14]Oxidative phosphorylationVacuolar acidificationProtein bindingVacuolar proton-transporting V-type ATPase, V1 domain 3.30.70.1180 91 4 65 3.12 4.73
2qmwA03 76.09 Phenylalanine, tyrosine and tryptophan biosynthesisMetabolic pathwaysPrephenate dehydratase [EC:4.2.1.51]Similar to chorismate mutaseStaphylococcus aureus subsp. aureus Mu50 3.30.70.260 73 7 72 3.37 4.64
2nyiA01 75.63 3.30.70.260 77 6 72 3.59 4.94
1lfwA03 75.50 Lactobacillus delbrueckii subsp. lactisBeta-Ala-Xaa dipeptidase 3.30.70.360 88 10 56 2.76 4.86
2nyiA02 75.18 3.30.70.260 89 7 66 2.92 4.40
2w25A02 74.70 Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory proteinLeucine-responsive regulatory proteinMycobacterium tuberculosis 3.30.70.920 81 4 70 3.33 4.73
1rwuA00 74.02 Hypothetical proteinUPF0250 protein ybeDEscherichia coli K-12 3.30.70.1460 87 7 64 3.06 4.75
1pytA00 72.79 Bos taurusCarboxypeptidase A1 [EC:3.4.17.1]Carboxypeptidase A1 3.30.70.340 94 6 70 3.30 4.70
1fxlA01 71.70 AU-rich element bindingELAV like protein 2/3/4MRNA processingHomo sapiensELAV-like protein 4 3.30.70.330 71 7 61 3.04 4.91
1sqgA03 71.18 Ribosomal RNA small subunit methyltransferase B [EC:2.1.1.-]Ribosomal RNA small subunit methyltransferase BRRNA (cytosine-C5-)-methyltransferase activityRRNA base methylationEscherichia coli K-12 3.30.70.1170 58 10 71 3.36 4.72
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Displaying entries 1 to 26 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|3cj8C02
KKQTLVKVTLKGQLKEVTFPETIKVFNNCKTGTLFGDWADVKPFLEANKEKIEDYVVENDARNSAI
BLAST against CATH

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Domain COMBS Sequence 

>pdb|3cj8C02
KKQTLVKVTLKGQLKEVTFPETIKVFNNCKTGTLFGDWADVKPFLEANKEKIEDYVVENDARNSAI
BLAST against CATH

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Domain History Events (6)

Domain assigned by auto on 28 Apr 2009 11:27

Assigning to "3.30.70.250" based on similarity with "3cj8A02"

Flow stage update by auto on 28 Apr 2009 11:08

No in_process hits for Domain "3cj8C02" ready to be processed

Flow stage update by auto on 28 Apr 2009 11:08

NW result present for Domain "3cj8C02"

Flow stage update by auto on 20 Apr 2009 08:14

All required files are present for Domain "3cj8C02"

Flow stage update by auto on 01 Apr 2009 09:36

Beginning processing for Domain "3cj8C02"

Insertion by cuff on 31 Mar 2009 17:28

nice chopping