CATH Domain: 3c9zA02 XML data for domain: 3c9zA02

Molscript image for 3c9zA02
3c9zA02
PDB coordinates for domain 3c9zA02

PDB 3c9z, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.80 Trefoil
2.80.10 Trefoil (Acidic Fibroblast Growth Factor, subunit A)
2.80.10.50 Gene3D
2.80.10.50.9
2.80.10.50.9.1
2.80.10.50.9.1.1
2.80.10.50.9.1.1.1
2.80.10.50.9.1.1.1.1

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Segment boundaries for domain 3c9zA02

Chopping figure for domain 3c9zA02
DomainStart PDB ResidueStop PDB Residue
3c9zA01 1 130
3c9zA02 131 255

Structural Neighbourhood (27 entries)

There are 27 matching structural neighberhood comparisons for CATH ID 2.80.10.50.9.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 27 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1m2tB02 95.14 Beta-galactoside-specific lectin 1Viscum album 2.80.10.50 124 42 98 0.74 0.75
1vclA02 88.11 Cucumaria echinataHemolytic lectin CEL-III 2.80.10.50 134 20 91 2.27 2.49
1vclA01 86.44 Cucumaria echinataHemolytic lectin CEL-III 2.80.10.50 149 20 81 1.90 2.34
1dqgA00 86.26 Mus musculusMacrophage mannose receptor 1Mannose bindingCell surfaceTransmembrane receptor activity 2.80.10.50 134 12 89 1.98 2.21
1upsA02 84.41 Clostridium perfringensGlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosidase 2.80.10.50 133 13 89 2.25 2.51
1dfcA03 83.69 FascinActin cytoskeletonActin filament bundle assemblyHomo sapiensCell proliferation 2.80.10.50 123 11 91 2.27 2.49
1q1uA00 83.28 Pathways in cancerMAPK signaling pathwayMelanomaRegulation of actin cytoskeletonFibroblast growth factor 12 2.80.10.50 138 11 83 2.14 2.57
1dfcA01 83.21 FascinActin cytoskeletonActin filament bundle assemblyHomo sapiensCell proliferation 2.80.10.50 122 8 86 1.89 2.19
1n4kA01 83.19 MicrosomeVoluntary musculoskeletal movementNucleolusPhosphoinositide bindingSarcoplasmic reticulum 2.80.10.50 141 9 85 2.76 3.22
1dfcA02 82.95 FascinActin cytoskeletonActin filament bundle assemblyHomo sapiensCell proliferation 2.80.10.50 123 4 88 2.48 2.79
1jlxA02 82.78 Amaranthus caudatusAgglutinin 2.80.10.50 140 6 86 2.88 3.33
1w3fA01 82.73 Laetiporus sulphureusHemolytic lectin LSLa 2.80.10.50 147 10 82 2.65 3.22
1wd3A02 81.29 Alpha-L-arabinofuranosidase BAspergillus awamori 2.80.10.50 162 6 69 1.85 2.65
2fdbN00 81.22 Type 2 fibroblast growth factor receptor bindingMesonephros developmentPositive regulation of cell proliferationType 1 fibroblast growth factor receptor bindingExtracellular space 2.80.10.50 148 12 78 2.14 2.73
2vxtI00 80.70 Cytokine activityInterleukin 18Signal transducer activityInterleukin-18Interferon-gamma biosynthetic process 2.80.10.50 156 12 76 2.69 3.53
1dfcA04 80.67 FascinActin cytoskeletonActin filament bundle assemblyHomo sapiensCell proliferation 2.80.10.50 107 11 79 1.96 2.47
1sr4A00 80.65 Haemophilus ducreyiCytolethal distending toxin subunit ACytolethal distending toxin subunit A 2.80.10.50 167 13 71 2.71 3.77
1jlxA01 80.39 Amaranthus caudatusAgglutinin 2.80.10.50 159 6 77 2.80 3.62
1ihkA00 79.82 Pathways in cancerMelanomaMAPK signaling pathwayRegulation of actin cytoskeletonGlia-activating factor 2.80.10.50 157 7 72 2.05 2.82
1t9fA00 79.45 Caenorhabditis elegansPutative uncharacterized protein 2.80.10.50 178 8 67 2.28 3.35
1md6A00 79.03 Mus musculusInterleukin-1 family member 5Interleukin 1 family, member 5 (delta) 2.80.10.50 154 6 77 3.31 4.28
1hcdA00 79.00 Membrane fractionPlasma membraneActin filament bindingHisactophilin-1Cytosol 2.80.10.50 118 5 88 2.79 3.17
1sr4C00 78.65 Cytolethal distending toxin protein CCytolethal distending toxin subunit CHaemophilus ducreyi 2.80.10.50 154 9 68 3.23 4.69
2qn4A00 77.52 Oryza sativa Japonica GroupAlpha-amylase inhibitor activityAlpha-amylase/subtilisin inhibitorSerine-type endopeptidase inhibitor activity 2.80.10.50 159 7 67 2.81 4.14
3iagC02 75.98 Transcription factor bindingHeart developmentRegulation of timing of cell differentiationDefense response to bacteriumNotch signaling pathway 2.80.10.50 155 9 59 2.23 3.76
1epwA04 75.50 Bontoxilysin [EC:3.4.24.69]Clostridium botulinumBotulinum neurotoxin type B 2.80.10.50 191 5 64 3.18 4.90
1xzzA00 74.66 MicrosomeNucleolusPhosphoinositide bindingVoluntary musculoskeletal movementSarcoplasmic reticulum 2.80.10.50 216 5 55 2.50 4.54
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Displaying entries 1 to 27 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|3c9zA02
PIVASIVGYKEMCLQSNGENNGVWMEDCEATSLQQQWALYGDRTIRVNSTRGLCVTTNGYNSKDLIIILKCQGLPSQRWF
FNSDGAIVNPKSRLVMDVRASNVSLREIIIFPATGNPNQQWVTQV
BLAST against CATH

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Domain COMBS Sequence 

>pdb|3c9zA02
PIVASIVGYKEMCLQSNGENNGVWMEDCEATSLQQQWALYGDRTIRVNSTRGLCVTTNGYNSKDLIIILKCQGLPSQRWF
FNSDGAIVNPKSRLVMDVRASNVSLREIIIFPATGNPNQQWVTQV
BLAST against CATH

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Domain History Events (6)

Domain assigned by auto on 01 Dec 2008 08:56

Assigning to "2.80.10.50" based on similarity with "1hwmB02"

Flow stage update by auto on 01 Dec 2008 08:26

No in_process hits for Domain "3c9zA02" ready to be processed

Flow stage update by auto on 01 Dec 2008 08:26

NW result present for Domain "3c9zA02"

Flow stage update by auto on 29 Nov 2008 11:10

All required files are present for Domain "3c9zA02"

Flow stage update by auto on 28 Nov 2008 11:13

Beginning processing for Domain "3c9zA02"

Insertion by auto on 28 Nov 2008 11:10

Final ChopClose added based on similarity with "1hwmB"