CATH Domain: 3c9zA01 XML data for domain: 3c9zA01

Molscript image for 3c9zA01
3c9zA01
PDB coordinates for domain 3c9zA01

PDB 3c9z, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.80 Trefoil
2.80.10 Trefoil (Acidic Fibroblast Growth Factor, subunit A)
2.80.10.50 Gene3D
2.80.10.50.7
2.80.10.50.7.1
2.80.10.50.7.1.1
2.80.10.50.7.1.1.1
2.80.10.50.7.1.1.1.1

[top]
Segment boundaries for domain 3c9zA01

Chopping figure for domain 3c9zA01
DomainStart PDB ResidueStop PDB Residue
3c9zA01 1 130
3c9zA02 131 255

Structural Neighbourhood (27 entries)

There are 27 matching structural neighberhood comparisons for CATH ID 2.80.10.50.7.1.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 27 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
3c9zA02 91.47 Sambucus nigraNigrin b 2.80.10.50 125 26 92 1.59 1.72
1m2tB02 90.23 Beta-galactoside-specific lectin 1Viscum album 2.80.10.50 124 24 91 1.72 1.88
1vclA02 87.80 Cucumaria echinataHemolytic lectin CEL-III 2.80.10.50 134 15 92 2.38 2.57
1vclA01 86.22 Cucumaria echinataHemolytic lectin CEL-III 2.80.10.50 149 17 84 2.43 2.87
1dqgA00 85.86 Mus musculusMacrophage mannose receptor 1Mannose bindingCell surfaceTransmembrane receptor activity 2.80.10.50 134 16 90 3.09 3.42
1upsA02 83.65 Clostridium perfringensGlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosidase 2.80.10.50 133 7 90 2.76 3.06
1jlxA02 82.73 Amaranthus caudatusAgglutinin 2.80.10.50 140 10 87 3.50 3.98
1dfcA03 82.69 FascinActin cytoskeletonActin filament bundle assemblyHomo sapiensCell proliferation 2.80.10.50 123 9 89 2.67 2.99
1n4kA01 82.54 MicrosomeVoluntary musculoskeletal movementNucleolusPhosphoinositide bindingSarcoplasmic reticulum 2.80.10.50 141 5 85 2.95 3.44
1dfcA01 82.48 FascinActin cytoskeletonActin filament bundle assemblyHomo sapiensCell proliferation 2.80.10.50 122 10 84 2.76 3.26
1dfcA02 82.09 FascinActin cytoskeletonActin filament bundle assemblyHomo sapiensCell proliferation 2.80.10.50 123 5 86 2.59 2.98
1pwaA00 81.97 Negative regulation of bile acid biosynthetic processNervous system developmentPositive regulation of glucose importPathways in cancerPositive regulation of cell proliferation 2.80.10.50 123 5 80 2.53 3.16
1w3fA01 81.87 Laetiporus sulphureusHemolytic lectin LSLa 2.80.10.50 147 10 82 3.15 3.80
1q1uA00 81.82 Pathways in cancerMAPK signaling pathwayMelanomaRegulation of actin cytoskeletonFibroblast growth factor 12 2.80.10.50 138 5 84 2.51 2.96
1dfcA04 81.26 FascinActin cytoskeletonActin filament bundle assemblyHomo sapiensCell proliferation 2.80.10.50 107 11 75 1.94 2.57
1sr4A00 81.13 Haemophilus ducreyiCytolethal distending toxin subunit ACytolethal distending toxin subunit A 2.80.10.50 167 18 73 3.02 4.10
2vxtI00 80.80 Cytokine activityInterleukin 18Signal transducer activityInterleukin-18Interferon-gamma biosynthetic process 2.80.10.50 156 13 76 3.13 4.10
1wd3A02 80.41 Alpha-L-arabinofuranosidase BAspergillus awamori 2.80.10.50 162 6 71 2.54 3.55
2fdbN00 80.24 Type 2 fibroblast growth factor receptor bindingMesonephros developmentPositive regulation of cell proliferationType 1 fibroblast growth factor receptor bindingExtracellular space 2.80.10.50 148 9 78 2.26 2.88
1jlxA01 80.03 Amaranthus caudatusAgglutinin 2.80.10.50 159 8 81 4.05 4.99
1ihkA00 79.63 Pathways in cancerMelanomaMAPK signaling pathwayRegulation of actin cytoskeletonGlia-activating factor 2.80.10.50 157 9 74 2.67 3.58
1t9fA00 79.36 Caenorhabditis elegansPutative uncharacterized protein 2.80.10.50 178 9 71 3.18 4.42
1md6A00 79.17 Mus musculusInterleukin-1 family member 5Interleukin 1 family, member 5 (delta) 2.80.10.50 154 6 78 3.82 4.86
1hcdA00 78.35 Membrane fractionPlasma membraneActin filament bindingHisactophilin-1Cytosol 2.80.10.50 118 5 85 3.21 3.76
1sr4C00 77.92 Cytolethal distending toxin protein CCytolethal distending toxin subunit CHaemophilus ducreyi 2.80.10.50 154 9 70 3.24 4.62
3iagC02 75.88 Transcription factor bindingHeart developmentRegulation of timing of cell differentiationDefense response to bacteriumNotch signaling pathway 2.80.10.50 155 3 58 1.92 3.27
1epwA04 75.62 Bontoxilysin [EC:3.4.24.69]Clostridium botulinumBotulinum neurotoxin type B 2.80.10.50 191 3 63 3.18 4.98
[1]
Displaying entries 1 to 27 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|3c9zA01
TSFTRNIVGRDGLCVDVRNGYDTDGTPLQLWPCGTQRNQRWTFDSDDTIRSMGKCMTANGLNNGSNIVIFNCSTAAENAI
KWEVPIDGSIINPSSGLVMTAPRAASRTILLLEDNIYAASQGWTVTNNVK
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|3c9zA01
TSFTRNIVGRDGLCVDVRNGYDTDGTPLQLWPCGTQRNQRWTFDSDDTIRSMGKCMTANGLNNGSNIVIFNCSTAAENAI
KWEVPIDGSIINPSSGLVMTAPRAASRTILLLEDNIYAASQGWTVTNNVK
BLAST against CATH

[top]
Domain History Events (6)

Domain assigned by auto on 01 Dec 2008 08:56

Assigning to "2.80.10.50" based on similarity with "1hwmB01"

Flow stage update by auto on 01 Dec 2008 08:26

No in_process hits for Domain "3c9zA01" ready to be processed

Flow stage update by auto on 01 Dec 2008 08:26

NW result present for Domain "3c9zA01"

Flow stage update by auto on 29 Nov 2008 11:10

All required files are present for Domain "3c9zA01"

Flow stage update by auto on 28 Nov 2008 11:13

Beginning processing for Domain "3c9zA01"

Insertion by auto on 28 Nov 2008 11:10

Final ChopClose added based on similarity with "1hwmB"