CATH Domain: 3brdA03 XML data for domain: 3brdA03

Molscript image for 3brdA03
3brdA03
PDB coordinates for domain 3brdA03

PDB 3brd, Chain A, Domain 3

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.60 Sandwich
2.60.40 Immunoglobulin-like
2.60.40.10 Immunoglobulins Gene3D
2.60.40.10.134
2.60.40.10.134.2
2.60.40.10.134.2.1
2.60.40.10.134.2.1.1
2.60.40.10.134.2.1.1.1

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Segment boundaries for domain 3brdA03

Chopping figure for domain 3brdA03
DomainStart PDB ResidueStop PDB Residue
3brdA01 195 373
3brdA01 541 562
3brdA02 379 540
3brdA03 563 661

Structural Neighbourhood (29 entries)

There are 29 matching structural neighberhood comparisons for CATH ID 2.60.40.10.134.2.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 29 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1p7hL02 83.81 Nuclear factor of activated T-cells, cytoplasmic 2Sequence-specific DNA binding transcription factor activityTranscription activator activityNucleusHomo sapiens 2.60.40.10 107 23 79 3.08 3.88
1imhC02 83.32 Nuclear factor of activated T-cells 5Transcription from RNA polymerase II promoterSequence-specific DNA binding transcription factor activityNucleusExcretion 2.60.40.10 106 22 82 3.30 4.02
1uadC00 83.19 ExocystRattus norvegicusExocyst complex component 2 2.60.40.10 92 11 88 3.50 3.97
2uzyB04 82.65 Basal plasma membraneHepatocyte growth factor receptor activityEpithelial cell signaling in Helicobacter pylori infectionPathways in cancerProto-oncogene tyrosine-protein kinase Met [EC:2.7.10.1] 2.60.40.10 79 18 80 3.34 4.14
2uzyB03 82.63 Hepatocyte growth factor receptor activityBasal plasma membranePathways in cancerEpithelial cell signaling in Helicobacter pylori infectionProto-oncogene tyrosine-protein kinase Met [EC:2.7.10.1] 2.60.40.10 87 14 78 3.28 4.18
1jmxA03 80.69 Quinohemoprotein amine dehydrogenase 60 kDa subunitPseudomonas putida 2.60.40.10 79 10 80 3.63 4.50
1ej6A05 79.78 Mammalian orthoreovirus 3 DearingOuter capsid protein lambda-2 2.60.40.10 95 6 77 3.20 4.11
1iarB01 79.34 Jak-STAT signaling pathwayInterleukin 4 receptorIntegral to plasma membraneInterleukin-4 receptor activityHematopoietic cell lineage 2.60.40.10 96 11 86 3.74 4.33
2uzxB02 78.09 Hepatocyte growth factor receptor activityBasal plasma membraneEpithelial cell signaling in Helicobacter pylori infectionPathways in cancerProto-oncogene tyrosine-protein kinase Met [EC:2.7.10.1] 2.60.40.10 121 15 63 3.01 4.73
1cwvA02 78.08 InvasinYersinia pseudotuberculosis 2.60.40.920 97 8 81 3.87 4.75
3cmgA04 77.20 Putative beta-galactosidaseBacteroides fragilis NCTC 9343 2.60.40.1560 87 5 86 4.13 4.80
1dceA02 76.73 Rattus norvegicusRab geranylgeranyltransferase activityProtein geranylgeranyltransferase type II [EC:2.5.1.60]Geranylgeranyl transferase type-2 subunit alpha 2.60.40.1130 103 10 78 3.14 3.99
1qr4A01 76.52 TenascinGallus gallus 2.60.40.10 87 11 81 3.84 4.70
1tdqA02 76.30 Nervous system developmentRattus norvegicusTenascinFocal adhesionProteinaceous extracellular matrix 2.60.40.10 90 8 84 3.81 4.49
1svbA04 75.67 Genome polyproteinTick-borne encephalitis virus (WESTERN SUBTYPE) 2.60.40.350 96 6 69 3.27 4.69
2fnbA00 75.66 FibronectinPeptide cross-linkingER-Golgi intermediate compartmentFibrinogen complexSubstrate adhesion-dependent cell spreading 2.60.40.10 95 6 78 3.87 4.90
2gysA01 75.39 Jak-STAT signaling pathwayGranulocyte macrophage colony-stimulating factor receptor complexCytokine receptor common subunit betaCytokine receptor common subunit betaCytokine-cytokine receptor interaction 2.60.40.10 95 6 74 3.72 4.98
1pd6A00 75.10 Myosin-binding protein C, cardiac-typeHomo sapiensVentricular cardiac muscle tissue morphogenesisStriated muscle myosin thick filamentStructural constituent of muscle 2.60.40.10 94 10 78 3.86 4.90
1fnhA02 75.09 FibronectinPeptide cross-linkingER-Golgi intermediate compartmentFibrinogen complexSubstrate adhesion-dependent cell spreading 2.60.40.10 90 5 79 3.68 4.62
1jz7A04 74.89 Galactose metabolismSphingolipid metabolismOther glycan degradationMetabolic pathwaysLactose catabolic process 2.60.40.320 106 11 77 3.45 4.46
1p5uA02 74.55 Yersinia pestisChaperone protein caf1MProtein binding 2.60.40.1070 84 13 75 3.28 4.36
1qg3A01 74.19 Homo sapiensIntegrin beta-4Protein bindingIntegrin complex 2.60.40.10 91 6 79 3.85 4.84
1fnhA03 74.17 FibronectinPeptide cross-linkingER-Golgi intermediate compartmentFibrinogen complexSubstrate adhesion-dependent cell spreading 2.60.40.10 89 6 81 3.84 4.70
2gysA02 73.78 Jak-STAT signaling pathwayCytokine receptor common subunit betaApoptosisCytokine-cytokine receptor interactionGranulocyte macrophage colony-stimulating factor receptor complex 2.60.40.10 102 11 81 3.74 4.60
1y6kR02 73.78 Interleukin-10 receptor activityPlasma membraneHomo sapiensInterleukin-10 receptor subunit alpha 2.60.40.10 103 6 75 3.74 4.94
2e7hA01 73.62 Cell surfaceOrgan morphogenesisIntegral to plasma membraneEph receptor B4 [EC:2.7.10.1]Homo sapiens 2.60.40.10 89 6 75 3.74 4.97
3k6iA00 73.60 Gallus gallusCadherin-13 2.60.40.60 99 6 74 3.51 4.70
1c7sA04 72.27 ChitobiaseSerratia marcescens 2.60.40.320 66 15 63 3.11 4.90
2qfpA01 72.18 Fe(3+)-Zn(2+) purple acid phosphatasePhaseolus vulgaris 2.60.40.380 97 6 78 3.82 4.88
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Displaying entries 1 to 29 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|3brdA03
PVVGSLEVDGHGEASRVELHGRDFKPNLKVWFGATPVETTFRSEESLHCSIPPVSQVRNEQTHWMFTNRTTGDVEVPISL
VRDDGVVYSSGLTFSYKSL
BLAST against CATH

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Domain COMBS Sequence 

>pdb|3brdA03
PVVGSLEVDGHGEASRVELHGRDFKPNLKVWFGATPVETTFRSEESLHCSIPPVSQVRNEQTHWMFTNRTTGDVEVPISL
VRDDGVVYSSGLTFSYKSLER
BLAST against CATH

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Domain History Events (9)

Domain assigned by auto on 06 Apr 2008 14:33

Assigning to "2.60.40.10" based on similarity with "3brfA03"

Flow stage update by auto on 06 Apr 2008 14:32

No in_process hits for Domain "3brdA03" ready to be processed

Update comment by auto on 06 Apr 2008 14:21

Domain "3brdA03" hits Domain "3brgC03" (44.6808510638298% over 93.0693069306931%) which is currently in process

Update comment by auto on 06 Apr 2008 11:18

Domain "3brdA03" hits Domain "3brfA03" (100% over 100%) which is currently in process

Flow stage update by auto on 06 Apr 2008 11:05

Domain "3brdA03" hits Domain "3brfA03" (100% over 100%) which is currently in process

Flow stage update by auto on 06 Apr 2008 11:05

NW result present for Domain "3brdA03"

Flow stage update by auto on 05 Apr 2008 08:22

All required files are present for Domain "3brdA03"

Flow stage update by auto on 04 Apr 2008 21:01

Beginning processing for Domain "3brdA03"

Insertion by auto on 04 Apr 2008 20:23

Final ChopClose added based on similarity with "1ttuA"