CATH Domain: 3bmvA03 XML data for domain: 3bmvA03

Molscript image for 3bmvA03
3bmvA03
PDB coordinates for domain 3bmvA03

PDB 3bmv, Chain A, Domain 3

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.60 Sandwich
2.60.40 Immunoglobulin-like
2.60.40.10 Immunoglobulins Gene3D
2.60.40.10.113
2.60.40.10.113.1
2.60.40.10.113.1.1
2.60.40.10.113.1.1.1
2.60.40.10.113.1.1.1.1

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Segment boundaries for domain 3bmvA03

Chopping figure for domain 3bmvA03
DomainStart PDB ResidueStop PDB Residue
3bmvA01 1 400
3bmvA02 401 495
3bmvA03 496 579
3bmvA04 580 682

Structural Neighbourhood (53 entries)

There are 53 matching structural neighberhood comparisons for CATH ID 2.60.40.10.113.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 53 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2uzyB04 88.40 Basal plasma membraneHepatocyte growth factor receptor activityEpithelial cell signaling in Helicobacter pylori infectionPathways in cancerProto-oncogene tyrosine-protein kinase Met [EC:2.7.10.1] 2.60.40.10 79 15 88 1.31 1.48
2uzyB03 86.21 Hepatocyte growth factor receptor activityBasal plasma membranePathways in cancerEpithelial cell signaling in Helicobacter pylori infectionProto-oncogene tyrosine-protein kinase Met [EC:2.7.10.1] 2.60.40.10 87 23 85 1.74 2.05
1imhC02 85.61 Nuclear factor of activated T-cells 5Transcription from RNA polymerase II promoterSequence-specific DNA binding transcription factor activityNucleusExcretion 2.60.40.10 106 18 72 1.81 2.49
1jmxA03 85.43 Quinohemoprotein amine dehydrogenase 60 kDa subunitPseudomonas putida 2.60.40.10 79 20 87 2.19 2.50
3iagC03 84.87 Transcription factor bindingHeart developmentRegulation of timing of cell differentiationDefense response to bacteriumChromatin binding 2.60.40.10 93 15 83 3.11 3.71
1p7hL02 83.94 Nuclear factor of activated T-cells, cytoplasmic 2Sequence-specific DNA binding transcription factor activityTranscription activator activityNucleusHomo sapiens 2.60.40.10 107 16 72 1.94 2.66
1pbyA03 83.92 Paracoccus denitrificansQuinohemoprotein amine dehydrogenase 60 kDa subunit 2.60.40.10 76 17 87 2.17 2.48
1uadC00 83.52 ExocystRattus norvegicusExocyst complex component 2 2.60.40.10 92 21 86 2.37 2.73
2fcbA02 81.20 Low affinity immunoglobulin gamma Fc region receptor II-bHomo sapiensImmune responseSignal transduction 2.60.40.10 87 7 88 4.33 4.89
1k85A00 80.59 Bacillus circulansChitinase A1 2.60.40.10 88 17 81 3.22 3.94
2uzxB02 80.51 Hepatocyte growth factor receptor activityBasal plasma membraneEpithelial cell signaling in Helicobacter pylori infectionPathways in cancerProto-oncogene tyrosine-protein kinase Met [EC:2.7.10.1] 2.60.40.10 121 23 62 1.70 2.71
1b4rA00 80.23 Integral to plasma membranePolycystin-1Homophilic cell adhesionHomo sapiensProtein binding 2.60.40.670 80 11 90 3.49 3.88
1iamA01 79.76 Leukocyte migrationAdhesion to symbiontHeterophilic cell-cell adhesionRegulation of leukocyte mediated cytotoxicityT cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell 2.60.40.10 83 6 91 4.53 4.95
1pj5A05 79.64 N,N-dimethylglycine oxidaseArthrobacter globiformis 2.40.30.110 78 10 80 3.73 4.66
2nziA03 78.95 Structural constituent of muscleCalcium ion bindingSarcomere organizationTelethonin bindingActin filament binding 2.60.40.10 94 11 79 3.47 4.35
1l6zA02 78.54 Mus musculusCarcinoembryonic antigen-related cell adhesion molecule 1 2.60.40.10 96 16 82 4.07 4.95
1qg3A01 78.26 Homo sapiensIntegrin beta-4Protein bindingIntegrin complex 2.60.40.10 91 8 80 3.72 4.64
1uctA01 78.25 Immunoglobulin alpha Fc receptorIntegral to plasma membraneCD89 antigenHomo sapiensImmune response 2.60.40.10 91 8 83 3.56 4.26
1fnhA03 78.06 FibronectinPeptide cross-linkingER-Golgi intermediate compartmentFibrinogen complexSubstrate adhesion-dependent cell spreading 2.60.40.10 89 10 84 3.38 4.01
3d85D03 77.96 2.60.40.10 81 8 77 3.83 4.92
1cwvA02 77.90 InvasinYersinia pseudotuberculosis 2.60.40.920 97 15 80 3.49 4.34
1f00I01 77.84 Pathogenic Escherichia coli infectionIntiminIntiminProtein bindingEscherichia coli O127:H6 str. E2348/69 2.60.40.920 95 15 82 3.84 4.68
1iarB01 77.81 Jak-STAT signaling pathwayInterleukin 4 receptorIntegral to plasma membraneInterleukin-4 receptor activityHematopoietic cell lineage 2.60.40.10 96 7 80 3.42 4.26
1fnhA01 77.64 FibronectinER-Golgi intermediate compartmentPeptide cross-linkingFibrinogen complexSubstrate adhesion-dependent cell spreading 2.60.40.10 90 12 81 3.15 3.88
1cczA02 77.42 Homo sapiensLymphocyte function-associated antigen 3Protein binding 2.60.40.10 78 3 92 3.98 4.30
1qr4A01 77.19 TenascinGallus gallus 2.60.40.10 87 15 87 4.20 4.81
1ej6A05 77.18 Mammalian orthoreovirus 3 DearingOuter capsid protein lambda-2 2.60.40.10 95 10 73 3.03 4.11
2e7hA01 77.12 Cell surfaceOrgan morphogenesisIntegral to plasma membraneEph receptor B4 [EC:2.7.10.1]Homo sapiens 2.60.40.10 89 6 78 3.66 4.65
1fnfA01 76.87 FibronectinER-Golgi intermediate compartmentPeptide cross-linkingFibrinogen complexSubstrate adhesion-dependent cell spreading 2.60.40.10 94 12 78 3.43 4.36
1svbA04 76.76 Genome polyproteinTick-borne encephalitis virus (WESTERN SUBTYPE) 2.60.40.350 96 6 70 3.30 4.66
1fnfA02 76.74 FibronectinPeptide cross-linkingER-Golgi intermediate compartmentFibrinogen complexSubstrate adhesion-dependent cell spreading 2.60.40.10 87 13 83 3.58 4.27
1cwvA03 76.44 InvasinYersinia pseudotuberculosis 2.60.40.920 102 11 76 3.55 4.64
1iarB02 76.27 Jak-STAT signaling pathwayInterleukin 4 receptorIntegral to plasma membraneReceptor signaling protein activityHematopoietic cell lineage 2.60.40.10 92 7 71 3.44 4.80
1pd6A00 76.12 Myosin-binding protein C, cardiac-typeHomo sapiensVentricular cardiac muscle tissue morphogenesisStriated muscle myosin thick filamentStructural constituent of muscle 2.60.40.10 94 6 82 3.80 4.58
1fnhA02 75.88 FibronectinPeptide cross-linkingER-Golgi intermediate compartmentFibrinogen complexSubstrate adhesion-dependent cell spreading 2.60.40.10 90 21 85 4.02 4.70
1hxmA02 75.85 2.60.40.10 85 3 85 4.21 4.90
1p53A01 75.64 Leukocyte migrationAdhesion to symbiontHeterophilic cell-cell adhesionRegulation of leukocyte mediated cytotoxicityT cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell 2.60.40.10 98 10 79 3.94 4.95
2gysA03 75.62 Jak-STAT signaling pathwayGranulocyte macrophage colony-stimulating factor receptor complexCytokine receptor common subunit betaCytokine receptor common subunit betaApoptosis 2.60.40.10 86 11 76 3.64 4.74
1cidA02 75.52 Rattus norvegicusT-cell surface glycoprotein CD4Hematopoietic cell lineageT cell receptor signaling pathwayAntigen processing and presentation 2.60.40.10 71 11 81 3.90 4.80
2gy5A02 75.50 Cell surfaceMicrovillusTransmembrane receptor protein tyrosine kinase signaling pathwayProtein bindingSignal transduction 2.60.40.10 90 11 86 4.17 4.81
1tdqA02 75.14 Nervous system developmentRattus norvegicusTenascinFocal adhesionProteinaceous extracellular matrix 2.60.40.10 90 7 84 3.37 3.99
2ck3A01 75.11 F-type H+-transporting ATPase subunit alpha [EC:3.6.3.14]Huntington's diseaseOxidative phosphorylationParkinson's diseaseBos taurus 2.40.30.20 70 12 78 3.72 4.72
1eh9A03 75.08 Sulfolobus solfataricusMalto-oligosyltrehalose trehalohydrolase 2.60.40.10 87 3 82 3.95 4.77
2ec8A02 74.97 Pathways in cancerHematopoietic cell lineageProto-oncogene tyrosine-protein kinase Kit [EC:2.7.10.1]Acute myeloid leukemiaProtein binding 2.60.40.10 87 6 87 3.85 4.41
1uemA00 74.77 LuteolysisPositive regulation of axonogenesisIdentical protein bindingCell surfaceHomophilic cell adhesion 2.60.40.10 117 8 64 3.24 4.99
1j8kA00 74.77 FibronectinPeptide cross-linkingER-Golgi intermediate compartmentFibrinogen complexSubstrate adhesion-dependent cell spreading 2.60.40.10 94 7 84 3.69 4.39
2gy5A04 74.69 MicrovillusCell surfaceTransmembrane receptor protein tyrosine kinase signaling pathwaySignal transductionProtein binding 2.60.40.10 99 7 76 3.78 4.92
1o75A04 74.62 Treponema pallidum47 kDa membrane antigen 2.60.40.1270 82 5 84 3.64 4.33
1dceA02 74.40 Rattus norvegicusRab geranylgeranyltransferase activityProtein geranylgeranyltransferase type II [EC:2.5.1.60]Geranylgeranyl transferase type-2 subunit alpha 2.60.40.1130 103 6 71 3.38 4.70
2dtgE05 74.06 Insulin receptorInsulin receptor complexPhosphoinositide 3-kinase bindingPositive regulation of nitric oxide biosynthetic processPositive regulation of respiratory burst 2.60.40.10 98 6 73 3.48 4.74
1im3D00 73.60 Unique short US2 glycoproteinHuman herpesvirus 5 strain AD169 2.60.40.1200 95 7 74 3.28 4.39
2fnbA00 73.54 FibronectinPeptide cross-linkingER-Golgi intermediate compartmentFibrinogen complexSubstrate adhesion-dependent cell spreading 2.60.40.10 95 6 75 3.73 4.92
3k6iA00 73.10 Gallus gallusCadherin-13 2.60.40.60 99 7 65 3.25 4.95
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Displaying entries 1 to 53 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|3bmvA03
SNSPLIGHVGPTMTKAGQTITIDGRGFGTTSGQVLFGSTAGTIVSWDDTEVKVKVPSVTPGKYNISLKTSSGATSNTYNN
INIL
BLAST against CATH

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Domain COMBS Sequence 

>pdb|3bmvA03
SNSPLIGHVGPTMTKAGQTITIDGRGFGTTSGQVLFGSTAGTIVSWDDTEVKVKVPSVTPGKYNISLKTSSGATSNTYNN
INIL
BLAST against CATH

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Domain History Events (8)

Domain assigned by auto on 28 Jul 2008 23:56

Assigning to "2.60.40.10" based on similarity with "1a47A03"

Flow stage update by auto on 28 Jul 2008 23:55

No in_process hits for Domain "3bmvA03" ready to be processed

Update comment by auto on 28 Jul 2008 23:27

Domain "3bmvA03" hits Domain "3bmwA03" (100% over 100%) which is currently in process

Flow stage update by auto on 28 Jul 2008 23:11

Domain "3bmvA03" hits Domain "3bmwA03" (100% over 100%) which is currently in process

Flow stage update by auto on 28 Jul 2008 23:11

NW result present for Domain "3bmvA03"

Flow stage update by auto on 26 Jul 2008 11:49

All required files are present for Domain "3bmvA03"

Flow stage update by auto on 26 Jul 2008 11:49

Beginning processing for Domain "3bmvA03"

Insertion by auto on 25 Jul 2008 23:19

Final ChopClose added based on similarity with "3bmwA"