CATH Domain: 3bmvA02 XML data for domain: 3bmvA02

Molscript image for 3bmvA02
3bmvA02
PDB coordinates for domain 3bmvA02

PDB 3bmv, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.60 Sandwich
2.60.40 Immunoglobulin-like
2.60.40.1180 Golgi alpha-mannosidase II Gene3D
2.60.40.1180.2
2.60.40.1180.2.1
2.60.40.1180.2.1.1
2.60.40.1180.2.1.1.1
2.60.40.1180.2.1.1.1.1

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Segment boundaries for domain 3bmvA02

Chopping figure for domain 3bmvA02
DomainStart PDB ResidueStop PDB Residue
3bmvA01 1 400
3bmvA02 401 495
3bmvA03 496 579
3bmvA04 580 682

Structural Neighbourhood (21 entries)

There are 21 matching structural neighberhood comparisons for CATH ID 2.60.40.1180.2.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 21 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1ji1A03 85.26 Neopullulanase 1Thermoactinomyces vulgaris 2.60.40.1180 90 20 90 2.42 2.68
1ua7A02 85.10 Starch and sucrose metabolismBacillus subtilisAlpha-amylaseAlpha-amylase [EC:3.2.1.1]Metabolic pathways 2.60.40.1180 78 26 81 2.12 2.59
1wzlA04 84.45 Neopullulanase 2Thermoactinomyces vulgaris 2.60.40.1180 83 14 84 2.47 2.91
1mxgA02 83.52 Pyrococcus furiosusAlpha amylase 2.60.40.1180 98 19 88 3.39 3.82
3edfA03 82.75 CyclomaltodextrinaseFlavobacterium sp. 92 2.60.40.1180 80 16 81 2.58 3.16
1e43A03 82.50 Alpha-amylaseBacillus amyloliquefaciens 2.60.40.1180 87 13 87 2.86 3.28
1uokA03 82.21 Bacillus cereusOligo-1,6-glucosidase 2.60.40.1180 78 15 80 2.68 3.32
1j0hA04 81.72 NeopullulanaseGeobacillus stearothermophilus 2.60.40.1180 83 14 86 3.40 3.95
2guyA02 81.29 Starch and sucrose metabolismAlpha-amylase [EC:3.2.1.1]Aspergillus oryzaeAlpha-amylase A type-1/2Metabolic pathways 2.60.40.1180 102 11 86 3.02 3.50
1zjaA03 81.22 Pseudomonas mesoacidophilaSucrose isomerase 2.60.40.1180 78 14 81 3.15 3.85
1g5aA04 81.18 AmylosucraseNeisseria polysaccharea 2.60.40.1180 74 17 77 3.02 3.90
1m7xA03 79.87 Starch and sucrose metabolismMetabolic pathways1,4-alpha-glucan branching enzyme [EC:2.4.1.18]Glycogen biosynthetic process1,4-alpha-glucan-branching enzyme 2.60.40.1180 106 15 79 2.96 3.74
1ea9C04 79.77 Bacillus sp.Cyclomaltodextrinase 2.60.40.1180 81 12 84 3.12 3.67
1uasA02 79.50 Alpha-galactosidaseOryza sativa Japonica Group 2.60.40.1180 88 11 87 4.03 4.63
1ktbA02 79.45 Alpha-N-acetylgalactosaminidaseGallus gallus 2.60.40.1180 91 16 87 4.23 4.86
1iv8A05 78.66 Sulfolobus acidocaldariusGlycosyltrehalose-producing enzyme 2.60.40.1180 66 18 68 3.06 4.45
1lwjA03 78.39 4-alpha-glucanotransferase [EC:2.4.1.25]Thermotoga maritimaStarch and sucrose metabolism4-alpha-glucanotransferaseMetabolic pathways 2.60.40.1180 50 8 53 1.97 3.66
3hg3B02 78.33 Galactose metabolismAlpha-galactosidase AExtracellular regionGlycosphingolipid catabolic processGlycosphingolipid biosynthesis - globo series 2.60.40.1180 101 13 84 3.53 4.19
1eh9A02 77.80 Sulfolobus solfataricusMalto-oligosyltrehalose trehalohydrolase 2.60.40.1180 62 9 65 2.47 3.77
1gjwA02 77.70 Thermotoga maritimaMaltodextrin glycosyltransferase 2.60.40.1180 68 14 73 3.36 4.60
1ht6A02 76.71 Alpha-amylase type A isozymeHordeum vulgare 2.60.40.1180 57 15 60 2.74 4.55
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Displaying entries 1 to 21 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|3bmvA02
NPAIAYGTTQQRWINNDVYIYERKFGNNVALVAINRNLSTSYNITGLYTALPAGTYTDVLGGLLNGNSISVASDGSVTPF
TLSAGEVAVWQYVSS
BLAST against CATH

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Domain COMBS Sequence 

>pdb|3bmvA02
NPAIAYGTTQQRWINNDVYIYERKFGNNVALVAINRNLSTSYNITGLYTALPAGTYTDVLGGLLNGNSISVASDGSVTPF
TLSAGEVAVWQYVSS
BLAST against CATH

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Domain History Events (8)

Domain assigned by auto on 28 Jul 2008 23:56

Assigning to "2.60.40.1180" based on similarity with "1a47A02"

Flow stage update by auto on 28 Jul 2008 23:55

No in_process hits for Domain "3bmvA02" ready to be processed

Update comment by auto on 28 Jul 2008 23:27

Domain "3bmvA02" hits Domain "3bmwA02" (100% over 100%) which is currently in process

Flow stage update by auto on 28 Jul 2008 23:11

Domain "3bmvA02" hits Domain "3bmwA02" (100% over 100%) which is currently in process

Flow stage update by auto on 28 Jul 2008 23:11

NW result present for Domain "3bmvA02"

Flow stage update by auto on 26 Jul 2008 11:49

All required files are present for Domain "3bmvA02"

Flow stage update by auto on 26 Jul 2008 11:49

Beginning processing for Domain "3bmvA02"

Insertion by auto on 25 Jul 2008 23:19

Final ChopClose added based on similarity with "3bmwA"