Domain assignment manual match h by cuff on 24 Mar 2009 19:44
same superfamily
CATH Domain: 3bfmA02
3bfmA02
PDB 3bfm, Chain A, Domain 2
| CATH Code | Level Description | Links |
|---|---|---|
 2
| Mainly Beta | |
 2.30
| Roll | |
 2.30.30
| SH3 type barrels. | |
 2.30.30.100
| Gene3D | |
 2.30.30.100.15
| ||
 2.30.30.100.15.1
| ||
 2.30.30.100.15.1.1
| ||
 2.30.30.100.15.1.1.1
| ||
 2.30.30.100.15.1.1.1.1
|
Segment boundaries for domain 3bfmA02
| Domain | Start PDB Residue | Stop PDB Residue |
|---|---|---|
| 3bfmA01 | 12 | 190 |
| 3bfmA02 | 191 | 233 |
Structural Neighbourhood (2 entries)
There are 2 matching structural neighberhood comparisons for CATH ID 2.30.30.100.15.1.1.1.1 (SIMAX score < 5)
[1]
Displaying entries 1 to 2 (page 1 of 1)
| Match Depth | Match | SSAP score | Match Keywords | Match Superfamily | Length | Sequence Id | Overlap | RMSD | SIMAX |
|---|---|---|---|---|---|---|---|---|---|
|
1biaA03 | 84.88 | 2.30.30.100 | 47 | 12 | 87 | 4.30 | 4.93 | |
|
1mmdA01 | 79.31 | 2.30.30.360 | 48 | 4 | 81 | 3.85 | 4.74 |
[1]
Displaying entries 1 to 2 (page 1 of 1)
Domain History Events (82)
Domain assigned by cuff on 24 Mar 2009 19:40
homology match
Domain assignment manual match h by cuff on 24 Mar 2009 19:37
homology match
Homcheck allotment by cuff on 24 Mar 2009 19:33
User 'cuff' has allocated a domain to themselves for HomChecking with comment : Grabbed this domain via HomCheck's "Get Me A Domain" button.
Flow stage update by cuff on 24 Mar 2009 19:33
User 'cuff' has allocated a domain to themselves for HomChecking with comment : Grabbed this domain via HomCheck's "Get Me A Domain" button.
Flow stage update by auto on 16 Mar 2009 06:48
Domain "3bfmA02" SCOP scan with no results - no SCOP mapping
Domain scan scop cath by auto on 16 Mar 2009 06:47
Adding scan of type "DOMAIN_SCAN_SCOP_CATH" with 0 results for 3bfmA02
Flow stage update by auto on 16 Mar 2009 03:53
Retrieved PRC_PFAMCATH results for job ID SID6553832546282352 and results inserted.
Domain scan prc pfamcath by auto on 16 Mar 2009 03:52
Adding scan of type "DOMAIN_SCAN_PRC_PFAMCATH" with 0 results for 3bfmA02
Update comment by auto on 14 Mar 2009 18:41
PRC_PFAMCATH job SID6553832546282352 is not yet finished.
Prc pfamcath submit by auto on 14 Mar 2009 18:34
The entry "3bfmA02" has been submitted to the PRC_PFAMCATH webservice.
Flow stage update by auto on 14 Mar 2009 18:34
The entry "3bfmA02" has been submitted to the PRC_PFAMCATH webservice.
Flow stage update by auto on 14 Mar 2009 18:26
Retrieved SSAP results for job ID SID3481560779320848 and results inserted.
Domain scan ssap cath by auto on 14 Mar 2009 18:25
Adding scan of type "DOMAIN_SCAN_SSAP_CATH" with 956 results for 3bfmA02
Update comment by auto on 10 Mar 2009 02:36
SSAP job SID3481560779320848 is not yet finished.
Flow stage update by auto on 10 Mar 2009 02:23
The entry "3bfmA02" has been submitted to the SSAP webservice.
Ssap cath submit by auto on 10 Mar 2009 02:23
The entry "3bfmA02" has been submitted to the SSAP webservice.
Flow stage update by auto on 10 Mar 2009 01:52
Retrieved PRC results for job ID SID5364322990805472 and inserted them into the database.
Domain scan prc cath by auto on 10 Mar 2009 01:52
Adding scan of type "DOMAIN_SCAN_PRC_CATH" with 1 results for 3bfmA02
Update comment by auto on 09 Mar 2009 20:01
PRC job SID5364322990805472 is not yet finished.
Flow stage update by auto on 09 Mar 2009 19:46
The entry "3bfmA02" has been submitted to the PRC webservice.
Prc cath submit by auto on 09 Mar 2009 19:46
The entry "3bfmA02" has been submitted to the PRC webservice.
Flow stage update by auto on 09 Mar 2009 19:10
Retrieved HMM(SAM) results for job ID SID3219978674873648 and inserted them into the database.
Domain scan sam cath by auto on 09 Mar 2009 19:09
Adding scan of type "DOMAIN_SCAN_SAM_CATH" with 1 results for 3bfmA02
Update comment by auto on 04 Mar 2009 16:11
HMM(SAM) job SID3219978674873648 is not yet finished.
Sam cath submit by auto on 04 Mar 2009 16:01
The entry "3bfmA02" has been submitted to the HMM (SAM) webservice.
Flow stage update by auto on 04 Mar 2009 16:01
The entry "3bfmA02" has been submitted to the HMM (SAM) webservice.
Flow stage update by auto on 04 Mar 2009 12:39
Unable to retrieve "3bfmA02" HMM(SAM) results for job "SID3994971963938368"
Update comment by auto on 04 Mar 2009 04:15
HMM(SAM) job SID3994971963938368 is not yet finished.
Flow stage update by auto on 04 Mar 2009 04:02
The entry "3bfmA02" has been submitted to the HMM (SAM) webservice.
Sam cath submit by auto on 04 Mar 2009 04:02
The entry "3bfmA02" has been submitted to the HMM (SAM) webservice.
Flow stage update by auto on 04 Mar 2009 01:00
Unable to retrieve "3bfmA02" HMM(SAM) results for job "SID7095500034692864"
Flow stage update by auto on 03 Mar 2009 23:34
The entry "3bfmA02" has been submitted to the HMM (SAM) webservice.
Sam cath submit by auto on 03 Mar 2009 23:34
The entry "3bfmA02" has been submitted to the HMM (SAM) webservice.
Flow stage update by auto on 19 Feb 2009 15:55
Unable to retrieve "3bfmA02" HMM(SAM) results for job "SID7843903225211968"
Update comment by auto on 19 Feb 2009 08:35
HMM(SAM) job SID7843903225211968 is not yet finished.
Flow stage update by auto on 19 Feb 2009 08:06
The entry "3bfmA02" has been submitted to the HMM (SAM) webservice.
Sam cath submit by auto on 19 Feb 2009 08:06
The entry "3bfmA02" has been submitted to the HMM (SAM) webservice.
Flow stage update by auto on 19 Feb 2009 07:39
Retrieved "3bfmA02" CATHEDRAL results for job ID SID4009658992989296 and inserted them into the database.
Domain scan cathedral cath by auto on 19 Feb 2009 07:39
Adding scan of type "DOMAIN_SCAN_CATHEDRAL_CATH" with 128 results for 3bfmA02
Flow stage update by auto on 19 Feb 2009 06:23
The entry "3bfmA02" has been submitted to the CATHEDRAL webservice.
Cathedral cath submit by auto on 19 Feb 2009 06:23
The entry "3bfmA02" has been submitted to the CATHEDRAL webservice.
Flow stage update by auto on 27 Jan 2009 12:00
Unable to retrieve "3bfmA02" CATHEDRAL results for job "SID8784334913266720"
Update comment by auto on 22 Jan 2009 17:09
"3bfmA02" CATHEDRAL job SID8784334913266720 is not yet finished.
Cathedral cath submit by auto on 22 Jan 2009 16:39
The entry "3bfmA02" has been submitted to the CATHEDRAL webservice.
Flow stage update by auto on 22 Jan 2009 16:39
The entry "3bfmA02" has been submitted to the CATHEDRAL webservice.
Flow stage update by auto on 21 Dec 2008 14:59
ScanList with 12830 domains written to "/cath/data/current/scanlists/cathdb_current.fletcher/3bfmA02.scanlist" for "3bfmA02"
Write scan list by auto on 21 Dec 2008 14:59
Writing ScanList containing 12830 domains to file "/cath/data/current/scanlists/cathdb_current.fletcher/3bfmA02.scanlist" for domain "3bfmA02"
Update comment by auto on 21 Dec 2008 11:52
Waiting for 76 new domains (example : 3davB00) to be processed so that they can be scanned against too.
Update comment by auto on 20 Dec 2008 20:42
Waiting for 113 new domains (example : 3bmkB00) to be processed so that they can be scanned against too.
Update comment by auto on 20 Dec 2008 19:04
Waiting for 148 new domains (example : 3bllA00) to be processed so that they can be scanned against too.
Update comment by auto on 20 Dec 2008 14:36
Waiting for 197 new domains (example : 2vmtA02) to be processed so that they can be scanned against too.
Update comment by auto on 20 Dec 2008 11:35
Waiting for 239 new domains (example : 2jknF00) to be processed so that they can be scanned against too.
Update comment by auto on 20 Dec 2008 07:50
Waiting for 256 new domains (example : 2jkjA00) to be processed so that they can be scanned against too.
Update comment by auto on 20 Dec 2008 03:58
Waiting for 248 new domains (example : 2jkjA00) to be processed so that they can be scanned against too.
Update comment by auto on 20 Dec 2008 00:49
Waiting for 246 new domains (example : 2jkjA00) to be processed so that they can be scanned against too.
Update comment by auto on 19 Dec 2008 20:43
Waiting for 197 new domains (example : 2jkjA00) to be processed so that they can be scanned against too.
Update comment by auto on 19 Dec 2008 16:55
Waiting for 189 new domains (example : 2jkjA00) to be processed so that they can be scanned against too.
Update comment by auto on 19 Dec 2008 11:34
Waiting for 32 new domains (example : 2jknA00) to be processed so that they can be scanned against too.
Update comment by auto on 17 Dec 2008 23:33
Waiting for 2 new domains (example : 3fcxA00) to be processed so that they can be scanned against too.
Update comment by auto on 17 Dec 2008 22:12
Waiting for 27 new domains (example : 3ex7B00) to be processed so that they can be scanned against too.
Update comment by auto on 17 Dec 2008 17:38
Waiting for 80 new domains (example : 2zecD01) to be processed so that they can be scanned against too.
Update comment by auto on 17 Dec 2008 14:52
Waiting for 132 new domains (example : 2zebD01) to be processed so that they can be scanned against too.
Update comment by auto on 17 Dec 2008 11:32
Waiting for 174 new domains (example : 2zebD01) to be processed so that they can be scanned against too.
Update comment by auto on 17 Dec 2008 09:47
Waiting for 227 new domains (example : 2w42B01) to be processed so that they can be scanned against too.
Update comment by auto on 17 Dec 2008 04:25
Waiting for 270 new domains (example : 2rklB00) to be processed so that they can be scanned against too.
Update comment by auto on 17 Dec 2008 00:27
Waiting for 285 new domains (example : 2jldA01) to be processed so that they can be scanned against too.
Update comment by auto on 16 Dec 2008 20:35
Waiting for 267 new domains (example : 2jldA01) to be processed so that they can be scanned against too.
Update comment by auto on 16 Dec 2008 18:32
Waiting for 261 new domains (example : 2jldA01) to be processed so that they can be scanned against too.
Update comment by auto on 16 Dec 2008 14:43
Waiting for 215 new domains (example : 2jldA01) to be processed so that they can be scanned against too.
Update comment by auto on 16 Dec 2008 10:54
Waiting for 201 new domains (example : 2jldA01) to be processed so that they can be scanned against too.
Update comment by auto on 15 Dec 2008 20:40
Waiting for 150 new domains (example : 2jldA01) to be processed so that they can be scanned against too.
Update comment by auto on 15 Dec 2008 17:13
Waiting for 297 new domains (example : 2r6gG01) to be processed so that they can be scanned against too.
Update comment by auto on 14 Dec 2008 20:41
Waiting for 337 new domains (example : 2r6gG01) to be processed so that they can be scanned against too.
Update comment by auto on 14 Dec 2008 17:19
Waiting for 547 new domains (example : 2r6gG01) to be processed so that they can be scanned against too.
Update comment by auto on 13 Dec 2008 20:37
Waiting for 598 new domains (example : 2r6gG01) to be processed so that they can be scanned against too.
Flow stage update by auto on 13 Dec 2008 20:35
No satisfactory AssignClose result found.
Flow stage update by auto on 13 Dec 2008 20:14
No in_process hits for Domain "3bfmA02" ready to be processed
Flow stage update by auto on 13 Dec 2008 20:14
NW result present for Domain "3bfmA02"
Flow stage update by auto on 10 Dec 2008 14:16
All required files are present for Domain "3bfmA02"
Flow stage update by auto on 10 Dec 2008 14:14
Beginning processing for Domain "3bfmA02"
Insertion by cuff on 08 Dec 2008 12:31
nice chopping
