CATH Domain: 3bemB00 XML data for domain: 3bemB00

Molscript image for 3bemB00
3bemB00
PDB coordinates for domain 3bemB00

PDB 3bem, Chain B, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.109 NADH Oxidase
3.40.109.10 NADH Oxidase Gene3D
3.40.109.10.3
3.40.109.10.3.1
3.40.109.10.3.1.1
3.40.109.10.3.1.1.1
3.40.109.10.3.1.1.1.1

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Segment boundaries for domain 3bemB00

Chopping figure for domain 3bemB00
DomainStart PDB ResidueStop PDB Residue
3bemB00 -3 205

Structural Neighbourhood (9 entries)

There are 9 matching structural neighberhood comparisons for CATH ID 3.40.109.10.3.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 9 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2b67A00 87.50 [EC:1.-.-.-]Nitroreductase family proteinStreptococcus pneumoniae 3.40.109.10 198 25 94 2.26 2.39
1icrA00 84.09 Trinitrotoluene degradationMembraneNitroreductase / dihydropteridine reductase [EC:1.-.-.- 1.5.1.34]Escherichia coli K-12Oxygen-insensitive NAD(P)H nitroreductase 3.40.109.10 216 15 87 2.58 2.95
2freA00 83.59 NAD(P)H-flavin oxidoreductaseAgrobacterium tumefaciens str. C58 3.40.109.10 195 16 83 4.12 4.91
2hayC00 83.42 [EC:1.-.-.-]NAD(P)H-dependent quinone reductaseStreptococcus pyogenes serotype M1 3.40.109.10 209 21 91 2.68 2.93
1vfrA00 83.19 Vibrio fischeriMajor NAD(P)H-flavin oxidoreductase 3.40.109.10 217 15 87 2.51 2.88
2h0uA00 82.71 NAD(P)H-flavin oxidoreductase[EC:1.-.-.-]Helicobacter pylori 3.40.109.10 187 21 83 3.41 4.07
2r01A01 81.84 Chlorobaculum tepidumNitroreductase family protein 3.40.109.10 149 22 66 2.25 3.38
1bkjA00 81.76 Vibrio harveyiNADPH-flavin oxidoreductase 3.40.109.10 230 16 72 3.01 4.15
2i7hA00 80.85 Nitroreductase familyBacillus cereus ATCC 14579 3.40.109.10 183 14 79 3.00 3.76
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Displaying entries 1 to 9 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|3bemB00
HHHHAEFTHLVNERRSASNFLSGHPITKEDLNEFELVALAPSAFNLQHTKYVTVLDQDVKEKLKQAANGQYKVVSSSAVL
LVLGDKQAYQQAADIYEGLKVLGILNKQEYDHVQDTVSFYENRGEQFKRDEAIRNASLSAFLSAAAAGWDTCPIGFDAEA
VKRILNIDDQFEVVITIGKEKTESRRPRGYRKPVNEFVEY
BLAST against CATH

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Domain COMBS Sequence 

>pdb|3bemB00
XGSDKIHHHHHHXAEFTHLVNERRSASNFLSGHPITKEDLNEXFELVALAPSAFNLQHTKYVTVLDQDVKEKLKQAANGQ
YKVVSSSAVLLVLGDKQAYQQAADIYEGLKVLGILNKQEYDHXVQDTVSFYENRGEQFKRDEAIRNASLSAXXFXLSAAA
AGWDTCPXIGFDAEAVKRILNIDDQFEVVXXITIGKEKTESRRPRGYRKPVNEFVEYX
BLAST against CATH

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Domain History Events (8)

Domain assigned by auto on 18 Feb 2009 18:43

Assigning to "3.40.109.10" based on similarity with "3bemA00"

Flow stage update by auto on 18 Feb 2009 18:15

No in_process hits for Domain "3bemB00" ready to be processed

Update comment by auto on 21 Oct 2008 23:09

Domain "3bemB00" hits Domain "3bemA00" (94.954128440367% over 100%) which is currently in process

Flow stage update by auto on 21 Oct 2008 23:07

Domain "3bemB00" hits Domain "3bemA00" (94.954128440367% over 100%) which is currently in process

Flow stage update by auto on 21 Oct 2008 23:07

NW result present for Domain "3bemB00"

Flow stage update by auto on 21 Oct 2008 08:34

All required files are present for Domain "3bemB00"

Flow stage update by auto on 20 Oct 2008 18:49

Beginning processing for Domain "3bemB00"

Insertion by auto on 20 Oct 2008 17:10

Final ChopClose added based on similarity with "3bemA"