CATH Domain: 3bdfB00 XML data for domain: 3bdfB00

Molscript image for 3bdfB00
3bdfB00
PDB coordinates for domain 3bdfB00

PDB 3bdf, Chain B, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.720 Alkaline Phosphatase, subunit A
3.40.720.10 Alkaline Phosphatase, subunit A Gene3D
3.40.720.10.1
3.40.720.10.1.1
3.40.720.10.1.1.1
3.40.720.10.1.1.1.1
3.40.720.10.1.1.1.1.1

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Segment boundaries for domain 3bdfB00

Chopping figure for domain 3bdfB00
DomainStart PDB ResidueStop PDB Residue
3bdfB00 4 449

Structural Neighbourhood (1 entries)

There are 1 matching structural neighberhood comparisons for CATH ID 3.40.720.10.1.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 1 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1zedA00 83.77 Alkaline phosphatase [EC:3.1.3.1]Cell surfaceAlkaline phosphatase, placental typeFolate biosynthesisHomo sapiens 3.40.720.10 481 26 77 2.60 3.36
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Displaying entries 1 to 1 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|3bdfB00
MPVLENRAAQGDITAPGGARRLTGDQTAALRDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQ
YTHYALNKKTGKPDYVTDSAASATAWSTGVKTYNGALGVDIHEKDHPTILEMAKAAGLATGNVSTAELQDAVPAALVAHV
TSRKCYGPSATSEKCPGNALEKGGKGSITEQLLNARADVTLGGGAKTFAETATAGEWQGKTLREQAQARGYQLVSDAASL
NSVTEANQQKPLLGLFADGNMPVRWLGPKATYHGNIDKPAVTCTPNPQRNDSVPTLAQMTDKAIELLSKNEKGFFLQVEG
ASIANPCGQIGETVDLDEAVQRALEFAKKEGNTLVIVTADHAHASQIVAPDTKAPGLTQALNTKDGAVMVMSYGSTGSQL
RIAAYGPHAANVVGLTDQTDLFYTMKAALGLK
BLAST against CATH

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Domain COMBS Sequence 

>pdb|3bdfB00
RTPEMPVLENRAAQGDITAPGGARRLTGDQTAALRDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALP
LTGQYTHYALNKKTGKPDYVTDSAASATAWSTGVKTYNGALGVDIHEKDHPTILEMAKAAGLATGNVSTAELQDAVPAAL
VAHVTSRKCYGPSATSEKCPGNALEKGGKGSITEQLLNARADVTLGGGAKTFAETATAGEWQGKTLREQAQARGYQLVSD
AASLNSVTEANQQKPLLGLFADGNMPVRWLGPKATYHGNIDKPAVTCTPNPQRNDSVPTLAQMTDKAIELLSKNEKGFFL
QVEGASIDKQDHAANPCGQIGETVDLDEAVQRALEFAKKEGNTLVIVTADHAHASQIVAPDTKAPGLTQALNTKDGAVMV
MSYGNSEEDSQEHTGSQLRIAAYGPHAANVVGLTDQTDLFYTMKAALGLKLEHHHHHH
BLAST against CATH

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Domain History Events (9)

Domain assigned by auto on 30 Nov 2008 20:52

Assigning to "3.40.720.10" based on similarity with "3bdgA00"

Flow stage update by auto on 30 Nov 2008 20:51

No in_process hits for Domain "3bdfB00" ready to be processed

Update comment by auto on 30 Nov 2008 20:35

Domain "3bdfB00" hits Domain "3bdgB00" (98.471615720524% over 100%) which is currently in process

Update comment by auto on 30 Nov 2008 17:37

Domain "3bdfB00" hits Domain "3bdgA00" (100% over 100%) which is currently in process

Flow stage update by auto on 30 Nov 2008 17:13

Domain "3bdfB00" hits Domain "3bdgA00" (100% over 100%) which is currently in process

Flow stage update by auto on 30 Nov 2008 17:13

NW result present for Domain "3bdfB00"

Flow stage update by auto on 29 Nov 2008 11:10

All required files are present for Domain "3bdfB00"

Flow stage update by auto on 28 Nov 2008 15:11

Beginning processing for Domain "3bdfB00"

Insertion by auto on 28 Nov 2008 14:07

Final ChopClose added based on similarity with "3bdgA"