CATH Domain: 3b9fI02 XML data for domain: 3b9fI02

Molscript image for 3b9fI02
3b9fI02
PDB coordinates for domain 3b9fI02

PDB 3b9f, Chain I, Domain 2

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.30 Roll
2.30.39 Alpha-1-antitrypsin; domain 1
2.30.39.10 Alpha-1-antitrypsin, domain 1 Gene3D
2.30.39.10.2
2.30.39.10.2.1
2.30.39.10.2.1.1
2.30.39.10.2.1.1.1
2.30.39.10.2.1.1.1.1

[top]
Segment boundaries for domain 3b9fI02

Chopping figure for domain 3b9fI02
DomainStart PDB ResidueStop PDB Residue
3b9fI01 28 189
3b9fI01 285 338
3b9fI02 190 284
3b9fI02 344 387

Structural Neighbourhood (10 entries)

There are 10 matching structural neighberhood comparisons for CATH ID 2.30.39.10.2.1.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 10 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2v95A02 93.01 Rattus norvegicusCorticosteroid-binding globulin 2.30.39.10 129 36 90 0.73 0.81
1jmoA02 90.25 Heparin cofactor IIHomo sapiensHeparin cofactor 2Complement and coagulation cascades 2.30.39.10 150 26 92 3.38 3.65
1k9oI02 86.64 Manduca sextaAlaserpinProtein binding 2.30.39.10 161 23 83 2.88 3.43
1imvA01 86.59 Negative regulation of angiogenesisHomo sapiensPigment epithelium-derived factorCell proliferationPositive regulation of neurogenesis 2.30.39.10 169 28 76 1.46 1.91
1hp7A01 86.37 Alpha-1-antitrypsinProtease bindingAlpha-1-antitrypsinHomo sapiensExtracellular space 2.30.39.10 95 41 68 2.14 3.13
1sekA02 84.84 Manduca sextaSerine protease inhibitor 2.30.39.10 117 22 71 2.45 3.44
2rivA02 84.22 Thyroxine-binding globulinHomo sapiensExtracellular spaceSerine-type endopeptidase inhibitor activity 2.30.39.10 87 40 61 2.18 3.52
2h4pA02 83.86 Gallus gallusHeterochromatin-associated protein MENT 2.30.39.10 102 20 67 2.36 3.49
3f02B02 83.58 Peripheral nervous system developmentNeuroserpinHomo sapiensCentral nervous system developmentSerine-type endopeptidase inhibitor activity 2.30.39.10 99 22 67 3.31 4.89
1mtpA02 82.75 Proteinase inhibitor I4, serpinThermobifida fusca YX 2.30.39.10 91 24 65 2.37 3.62
[1]
Displaying entries 1 to 10 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|3b9fI02
WETSFNHKGTQEQDFYVTSETVVRVPMMSREDQYHYLLDRNLSCRVVGVPYQGNATALFILPSEGKMQQVENGLSEKTLR
KWLKMFKKRQLELYLAAATGTIFTFRSARLNSQRLVFNRPFLMFIVDNNILFLGKVNRP
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|3b9fI02
WETSFNHKGTQEQDFYVTSETVVRVPMMSREDQYHYLLDRNLSCRVVGVPYQGNATALFILPSEGKMQQVENGLSEKTLR
KWLKMFKKRQLELYLAAATGTIFTFRSARLNSQRLVFNRPFLMFIVDNNILFLGKVNRP
BLAST against CATH

[top]
Domain History Events (6)

Domain assigned by auto on 29 Apr 2008 11:31

Assigning to "2.30.39.10" based on similarity with "2hi9A02"

Flow stage update by auto on 29 Apr 2008 11:11

No in_process hits for Domain "3b9fI02" ready to be processed

Flow stage update by auto on 29 Apr 2008 11:11

NW result present for Domain "3b9fI02"

Flow stage update by auto on 29 Apr 2008 08:11

All required files are present for Domain "3b9fI02"

Flow stage update by auto on 28 Apr 2008 08:21

Beginning processing for Domain "3b9fI02"

Insertion by auto on 28 Apr 2008 08:09

Final ChopClose added based on similarity with "2ol2A"