CATH Domain: 3b8xA01 XML data for domain: 3b8xA01

Molscript image for 3b8xA01
3b8xA01
PDB coordinates for domain 3b8xA01

PDB 3b8x, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.640 Aspartate Aminotransferase; domain 2
3.40.640.10 Type I PLP-dependent aspartate aminotransferase-like (Major domain) Gene3D
3.40.640.10.14
3.40.640.10.14.1
3.40.640.10.14.1.1
3.40.640.10.14.1.1.1
3.40.640.10.14.1.1.1.1

Segment boundaries for domain 3b8xA01

Chopping figure for domain 3b8xA01
DomainStart PDB ResidueStop PDB Residue
3b8xA01 3 264
3b8xA02 265 388

Structural Neighbourhood (24 entries)

There are 24 matching structural neighberhood comparisons for CATH ID 3.40.640.10.14.1.1.1.1 (SIMAX score < 5)

Displaying entries 1 to 24 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1o69A01 87.38 Campylobacter jejuniAminotransferase homolog 3.40.640.10 233 27 86 1.94 2.23
1mdoA01 86.64 Amino sugar and nucleotide sugar metabolismUDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferaseTwo-component systemSalmonella enterica subsp. enterica serovar TyphimuriumUDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.-] 3.40.640.10 226 28 85 1.84 2.15
1fc4A01 81.23 Glycine, serine and threonine metabolismMetal ion bindingLigase activity2-amino-3-ketobutyrate coenzyme A ligaseGlycine C-acetyltransferase [EC:2.3.1.29] 3.40.640.10 230 14 78 2.83 3.61
1jg8A01 81.00 Thermotoga maritimaThreonine aldolase [EC:4.1.2.5]Glycine, serine and threonine metabolismMetabolic pathwaysL-allo-threonine aldolase 3.40.640.10 245 17 82 2.77 3.37
1bs0A02 80.83 Biotin metabolismMetabolic pathways8-amino-7-oxononanoate synthase [EC:2.3.1.47]8-amino-7-oxononanoate synthase activityBiotin biosynthetic process 3.40.640.10 228 11 78 3.14 3.99
2ez2A02 80.13 Citrobacter freundiiTyrosine phenol-lyase 3.40.640.10 253 12 79 2.60 3.29
1t3iB02 79.23 Cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]Probable cysteine desulfuraseThiamine metabolismSelenoamino acid metabolismMetabolic pathways 3.40.640.10 258 15 88 4.26 4.80
1o4sA02 79.20 Tyrosine metabolismThermotoga maritimaArginine and proline metabolismAspartate aminotransferase [EC:2.6.1.1]Metabolic pathways 3.40.640.10 221 13 75 3.46 4.60
2oatA02 79.18 Ornithine--oxo-acid transaminase [EC:2.6.1.13]Arginine and proline metabolismOrnithine-oxo-acid transaminase activityVisual perceptionHomo sapiens 3.40.640.10 250 10 77 3.42 4.39
3dydA02 79.04 Tyrosine metabolismL-tyrosine:2-oxoglutarate aminotransferase activityPhenylalanine metabolismMetabolic pathwaysUbiquinone and other terpenoid-quinone biosynthesis 3.40.640.10 244 13 81 3.41 4.19
1xi9A02 78.79 Pyrococcus furiosusAminotransferase [EC:2.6.1.-]Alanine aminotransferase 3.40.640.10 242 14 79 3.30 4.15
1p3wA02 78.39 Thiamine metabolismCysteine desulfurase activitySelenocysteine lyase activityCysteine desulfuraseIron-sulfur cluster assembly 3.40.640.10 247 14 85 3.82 4.48
1sffA02 77.96 Valine, leucine and isoleucine degradationPropanoate metabolismMetabolic pathwaysButanoate metabolismBeta-Alanine metabolism 3.40.640.10 260 10 80 3.83 4.79
2qmaA03 77.70 Diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76]Vibrio parahaemolyticusGlycine, serine and threonine metabolismDiaminobutyrate-pyruvate transaminase & L-2,4-diaminobutyrate decarboxylaseMetabolic pathways 3.40.640.10 238 9 76 3.15 4.13
1d2fA02 77.63 Nitrogen metabolismSelenoamino acid metabolismSulfur metabolismMetabolic pathwaysCysteine and methionine metabolism 3.40.640.10 243 8 80 3.08 3.82
1gd9A02 77.54 Tyrosine metabolismArginine and proline metabolismAspartate aminotransferase [EC:2.6.1.1]Pyrococcus horikoshiiMetabolic pathways 3.40.640.10 223 13 75 3.55 4.72
1c7nA02 77.21 Treponema denticolaHemolysin 3.40.640.10 225 10 75 3.73 4.96
3k40A02 77.16 Dopamine biosynthetic process from tyrosineDevelopmental pigmentationGrowthProtein bindingDrosophila melanogaster 3.40.640.10 267 6 76 3.55 4.62
1ajsB02 77.03 Tyrosine metabolismArginine and proline metabolismSus scrofaAspartate aminotransferase [EC:2.6.1.1]Aspartate aminotransferase, cytoplasmic 3.40.640.10 278 8 77 3.69 4.75
3ftbA02 76.99 Tyrosine metabolismHistidinol-phosphate aminotransferase [EC:2.6.1.9]Histidine metabolismPhenylalanine metabolismMetabolic pathways 3.40.640.10 222 12 78 3.19 4.07
1svvA01 76.89 Leishmania major strain FriedlinThreonine aldolase [EC:4.1.2.5]Glycine, serine and threonine metabolismMetabolic pathwaysPutative uncharacterized protein 3.40.640.10 242 7 81 3.12 3.83
1fg7A01 76.87 Tyrosine metabolismHistidine metabolismMetabolic pathwaysPhenylalanine metabolismNovobiocin biosynthesis 3.40.640.10 203 12 71 3.19 4.45
3ffhB02 76.85 Tyrosine metabolismListeria innocuaHistidinol-phosphate aminotransferase [EC:2.6.1.9]Histidine metabolismMetabolic pathways 3.40.640.10 208 12 74 3.65 4.90
2gsaA02 76.42 Porphyrin and chlorophyll metabolismGlutamate-1-semialdehyde 2,1-aminomutaseGlutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]Synechococcus elongatus PCC 6301Metabolic pathways 3.40.640.10 249 9 76 3.78 4.93
Displaying entries 1 to 24 (page 1 of 1)


Domain ATOM Sequence

>pdb|3b8xA01
NYPLASSTWDDLEYKAIQSVLDSKMFTMGEYVKQYETQFAKTFGSKYAVMVSSGSTANLLMIAALFFTKKPRLKKGDEII
VPAVSWSTTYYPLQQYGLRVKFVDIDINTLNIDIESLKEAVTDSTKAILTVNLLGNPNNFDEINKIIGGRDIILLEDNCE
SMGATFNNKCAGTFGLMGTFSSFYSNHIATMEGGCIVTDDEEIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKF
VLPGYNVRPLEMSGAIGIEQLK    

Domain COMBS Sequence

>pdb|3b8xA01
GHMINYPLASSTWDDLEYKAIQSVLDSKMFTMGEYVKQYETQFAKTFGSKYAVMVSSGSTANLLMIAALFFTKKPRLKKG
DEIIVPAVSWSTTYYPLQQYGLRVKFVDIDINTLNIDIESLKEAVTDSTKAILTVNLLGNPNNFDEINKIIGGRDIILLE
DNCESMGATFNNKCAGTFGLMGTFSSFYSNHIATMEGGCIVTDDEEIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEE
SFKFVLPGYNVRPLEMSGAIGIEQLK    

Domain History Events (10)

Domain assigned by auto on 18 Mar 2009 15:39

Assigning to "3.40.640.10" based on similarity with "3b8xB01"

Flow stage update by auto on 18 Mar 2009 15:37

No in_process hits for Domain "3b8xA01" ready to be processed

Update comment by auto on 18 Mar 2009 15:35

Domain "3b8xA01" hits Domain "3b8xB01" (100% over 100%) which is currently in process

Update comment by auto on 18 Mar 2009 15:32

Domain "3b8xA01" hits Domain "2r0tB01" (99.6240601503759% over 100%) which is currently in process

Update comment by auto on 10 Dec 2008 14:21

Domain "3b8xA01" hits Domain "2r0tA01" (99.6240601503759% over 100%) which is currently in process

Flow stage update by auto on 10 Dec 2008 14:17

Domain "3b8xA01" hits Domain "2r0tA01" (99.6240601503759% over 100%) which is currently in process

Flow stage update by auto on 10 Dec 2008 14:17

NW result present for Domain "3b8xA01"

Flow stage update by auto on 10 Dec 2008 14:16

All required files are present for Domain "3b8xA01"

Flow stage update by auto on 10 Dec 2008 14:14

Beginning processing for Domain "3b8xA01"

Insertion by auto on 05 Dec 2008 17:48

Final ChopClose added based on similarity with "3b8xB"