CATH Domain: 3b5nJ00 XML data for domain: 3b5nJ00

Molscript image for 3b5nJ00
3b5nJ00
PDB coordinates for domain 3b5nJ00

PDB 3b5n, Chain J, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.20 Up-down Bundle
1.20.5 Single alpha-helices involved in coiled-coils or other helix-helix interfaces
1.20.5.110 Gene3D
1.20.5.110.4
1.20.5.110.4.1
1.20.5.110.4.1.1
1.20.5.110.4.1.1.1
1.20.5.110.4.1.1.1.1

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Segment boundaries for domain 3b5nJ00

Chopping figure for domain 3b5nJ00
DomainStart PDB ResidueStop PDB Residue
3b5nJ00 191 254

Structural Neighbourhood (80 entries)

There are 80 matching structural neighberhood comparisons for CATH ID 1.20.5.110.4.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 80 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1jthB00 91.33 Protein domain specific bindingMyosin head/neck bindingActomyosinRattus norvegicusProtein heterodimerization activity 1.20.5.110 67 48 95 1.52 1.59
1gl2B00 91.32 Mus musculusSyntaxin-7 1.20.5.110 59 27 92 1.11 1.20
3ii6A02 87.85 DNA ligation involved in DNA repairProtein C-terminus bindingDNA-dependent protein kinase-DNA ligase 4 complexResponse to X-rayDouble-strand break repair via nonhomologous end joining 1.20.5.370 58 8 87 2.00 2.29
1l2pA00 85.75 Oxidative phosphorylationMetabolic pathwaysATP synthesis coupled proton transportAnchored to membraneF-type H+-transporting ATPase subunit b [EC:3.6.3.14] 1.20.5.620 61 9 71 1.71 2.38
1gl2A00 85.34 Rattus norvegicusProtein complex assemblyVesicle-associated membrane protein 8Cellular membrane fusionVesicle-associated membrane protein 8 1.20.5.110 53 5 82 1.90 2.29
1ybkA00 84.90 TetrabrachionStaphylothermus marinus 1.20.5.1060 52 7 81 2.30 2.83
1nknA00 84.87 NucleusPositive regulation of RNA polymerase II transcriptional preinitiation complex assemblyGeneral control protein GCN4General control protein GCN4Positive regulation of gene-specific transcription from RNA polymerase II promoter 1.20.5.340 74 7 85 3.30 3.88
3e7kA00 84.86 Rattus norvegicusCalcium channel activityCalcium ion transportIntegral to membraneProtein binding 1.20.5.1010 54 7 84 3.77 4.47
1gk6B00 84.72 Positive regulation of RNA polymerase II transcriptional preinitiation complex assemblyIntermediate filamentVimentinCytosolPositive regulation of gene-specific transcription from RNA polymerase II promoter 1.20.5.170 52 17 73 1.20 1.63
1ik7A00 84.64 Regulation of proteolysisProtein domain specific bindingHemocyte proliferationPlasma membraneZygotic specification of dorsal/ventral axis 1.20.5.530 52 7 81 2.63 3.24
1ezjA02 84.55 Sendai virus (strain Harris)Phosphoprotein 1.10.287.340 52 7 73 3.04 4.14
1no4C00 84.42 Bacillus phage phi29Head morphogenesis protein 1.20.5.400 73 9 75 1.78 2.36
1gd2F00 83.98 NuA4 histone acetyltransferase complexFungal AP-1-like factorResponse to hydrogen peroxideResponse to methylglyoxalCellular response to oxidative stress 1.20.5.170 64 6 82 2.08 2.51
1jnmA00 83.43 Pathways in cancerChagas diseaseNeurotrophin signaling pathwayB cell receptor signaling pathwayT cell receptor signaling pathway 1.20.5.170 56 8 76 1.98 2.59
1t3jA00 83.37 Mus musculusMitochondrial fusionMitofusin-1Protein binding 1.20.5.110 62 6 60 1.19 1.95
2basA02 82.68 Bacillus subtilisUncharacterized EAL-domain containing protein ykuI 1.20.5.170 46 4 71 2.18 3.03
1urqC00 82.27 SNARE interactions in vesicular transportSleepRattus norvegicusRegulation of synaptogenesisVoltage-gated potassium channel complex 1.20.5.110 68 4 63 1.13 1.79
1jekA00 82.02 Visna/maedi virus EV1 KV1772Envelope glycoprotein gp160 1.20.5.440 40 15 60 1.29 2.12
1m56D00 81.96 Rhodobacter sphaeroidesAa3-type cytochrome c oxidase subunit IV 1.20.5.160 42 9 65 2.04 3.11
1gl2D00 81.95 Syntaxin-8Rattus norvegicusProtein bindingSyntaxin 8SNARE interactions in vesicular transport 1.20.5.110 54 5 78 3.63 4.65
1kilE00 81.76 Complexin-1Syntaxin-1 bindingRattus norvegicusDendriteSynaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex 1.20.5.580 41 9 57 2.30 3.98
1n2dC00 81.73 Mating projection tipGolgi inheritanceActin filament bindingVesicle-mediated transportMyosin-2 1.20.5.190 48 18 73 3.66 4.98
1llmD02 81.66 Early growth response protein 1Prion diseasesPositive regulation of RNA polymerase II transcriptional preinitiation complex assemblyResponse to insulin stimulusNegative regulation of transcription from RNA polymerase II promoter 3.30.160.60 55 1 50 0.69 1.38
2r9iA00 81.62 Putative phage capsid proteinCorynebacterium diphtheriae 1.10.287.80 69 4 56 1.76 3.11
2p7jB01 81.57 Vibrio parahaemolyticusPutative sensory box/GGDEF family protein 1.20.5.170 39 7 59 1.98 3.33
1uixA00 81.45 Chemokine signaling pathwayRho-associated, coiled-coil containing protein kinase [EC:2.7.11.1]Leukocyte transendothelial migrationWnt signaling pathwayTGF-beta signaling pathway 1.20.5.730 68 10 70 2.34 3.31
1jocA01 81.38 Zinc ion bindingVesicle fusionMembrane fractionSynaptic vesicle to endosome fusionProtein homodimerization activity 1.20.5.390 60 5 54 1.11 2.03
3hd7B00 81.29 Myosin head/neck bindingActomyosinProtein domain specific bindingRattus norvegicusProtein heterodimerization activity 1.20.5.110 98 20 65 1.37 2.10
1gl2C00 81.22 Mus musculusVesicle transport through interaction with t-SNAREs homolog 1BGolgi apparatusProtein binding 1.20.5.110 59 8 53 0.89 1.68
1pfiA00 81.04 Pseudomonas phage Pf1Capsid protein G8P 1.20.5.230 46 6 70 2.72 3.87
1jcdB00 80.65 Peptidoglycan bindingMurein lipoproteinMajor outer membrane lipoprotein LppProtein bindingEscherichia coli K-12 1.20.5.190 52 3 56 1.44 2.56
1svfC00 80.44 Simian virus 5 (strain W3)Fusion glycoprotein F0 1.20.5.300 62 1 56 1.33 2.36
1ik9B02 80.32 DNA ligation involved in DNA repairResponse to X-rayDNA-dependent protein kinase-DNA ligase 4 complexProtein C-terminus bindingDouble-strand break repair via nonhomologous end joining 1.20.5.370 83 9 69 3.49 4.99
1l4aA00 80.24 SynaptobrevinLoligo pealei 1.20.5.110 66 1 65 1.96 3.01
2v4hB00 79.83 Mus musculusNF-kappa-B essential modulatorActivation of NF-kappaB-inducing kinase activityB cell homeostasis 1.20.5.990 91 9 70 2.15 3.06
3kpeA00 79.57 Fusion glycoprotein F0Human respiratory syncytial virus A2 1.20.5.300 47 8 73 3.51 4.78
1ci6A00 79.52 Positive regulation of transcription from RNA polymerase II promoterCellular amino acid metabolic processNeurotrophin signaling pathwayActivating transcription factor 4Sequence-specific DNA binding transcription factor activity 1.20.5.170 56 7 50 0.79 1.58
2ifoA00 79.17 Xanthomonas phage XfCapsid protein G8P 1.20.5.230 46 4 65 2.73 4.16
1favA00 78.54 NucleusPositive regulation of RNA polymerase II transcriptional preinitiation complex assemblyEnvelope glycoprotein gp160General control protein GCN4General control protein GCN4 1.10.287.210 78 9 60 2.01 3.34
1aa0A00 78.49 Enterobacteria phage T4Fibritin 1.20.5.320 113 10 54 1.38 2.52
1dp5B00 77.95 CytoplasmProtease A inhibitor 3Saccharomyces cerevisiaeVacuolar protein catabolic processProtein binding 1.20.5.140 31 16 48 1.22 2.52
2zvoB00 77.77 Mus musculusNF-kappa-B essential modulatorActivation of NF-kappaB-inducing kinase activityB cell homeostasis 1.20.5.990 88 10 64 3.23 4.99
2wpqA00 77.73 Salmonella enterica subsp. enterica serovar TyphimuriumPutative inner membrane protein 1.20.5.980 99 1 61 2.48 4.02
1u57A00 77.70 Human immunodeficiency virus type 1 lw12.3 isolateGag polyprotein 1.20.5.760 48 6 70 2.70 3.84
1hf9A00 77.60 Protein homodimerization activityNegative regulation of hydrolase activityATPase inhibitor activityBos taurusATPase binding 1.20.5.500 41 2 57 1.93 3.34
2qjyC01 77.57 Oxidative phosphorylationMetabolic pathwaysRhodobacter sphaeroidesUbiquinol-cytochrome c reductase iron-sulfur subunitUbiquinol-cytochrome c reductase iron-sulfur subunit [EC:1.10.2.2] 1.20.5.510 33 3 50 1.19 2.38
1g2cB00 77.45 Human respiratory syncytial virus strain RSS-2Fusion glycoprotein F0 1.20.5.170 40 10 50 1.79 3.58
1ic2B00 77.37 Gallus gallusTropomyosin alpha-1 chain 1.20.5.340 77 7 44 1.58 3.58
1junA00 77.14 Pathways in cancerChagas diseaseNeurotrophin signaling pathwayB cell receptor signaling pathwayT cell receptor signaling pathway 1.20.5.170 43 4 51 1.51 2.93
1d7mA00 76.41 Cortexillin-1Response to bacteriumProtein homodimerization activityActin filament bundle assemblyActin filament network formation 1.20.5.1050 101 6 45 1.23 2.70
1omiA02 76.40 Listeria monocytogenesListeriolysin regulatory protein 1.20.5.460 27 7 39 0.53 1.36
2zxeB01 76.39 1.20.5.170 35 2 42 0.88 2.09
1gk4C00 76.32 Cellular component movementProtein C-terminus bindingIntermediate filamentVimentinCytosol 1.20.5.170 70 1 44 2.02 4.56
1s5lX00 76.00 Photosystem II reaction center X proteinThermosynechococcus elongatus BP-1 1.20.5.510 40 0 50 2.26 4.52
2k37A00 75.67 Bacteriochlorophyll c-binding proteinChlorobaculum tepidumChlorosome envelope protein A 1.20.5.950 59 5 48 1.44 2.97
1kv4A00 75.53 Moricin-1Bombyx mori 1.20.5.750 42 7 57 2.43 4.20
1gmjD00 75.52 Negative regulation of hydrolase activityProtein homodimerization activityATPase inhibitor activityBos taurusCalmodulin binding 1.20.5.500 56 3 46 2.00 4.27
1nwqA00 75.47 Protein domain specific bindingRattus norvegicusAcute-phase responsePathways in cancerOrgan regeneration 1.20.5.170 60 1 46 1.55 3.31
1owaA01 75.22 Structural constituent of cytoskeletonSpectrinHomo sapiensSpectrin-associated cytoskeletonActin filament organization 1.20.5.170 32 12 50 2.19 4.38
1pl5A00 73.57 Chromatin silencing complexLoss of chromatin silencing involved in replicative cell agingChromatin silencingDouble-strand break repair via nonhomologous end joiningDouble-stranded DNA binding 1.20.5.730 75 6 38 0.92 2.38
1tiiC00 73.35 Heat-labile enterotoxin IIB, A chainEscherichia coli 1.20.5.200 36 2 37 1.46 3.89
2b5uA02 72.30 Colicin-E3Escherichia coli 1.10.287.620 161 7 34 1.12 3.22
2r44A01 72.03 Cytophaga hutchinsonii ATCC 33406MoxR-like ATPase [EC:3.6.3.-]Putative uncharacterized protein 1.20.5.420 26 11 40 1.08 2.66
1piqA00 72.02 NucleusPositive regulation of RNA polymerase II transcriptional preinitiation complex assemblyGeneral control protein GCN4General control protein GCN4Specific RNA polymerase II transcription factor activity 1.20.5.170 31 3 32 0.41 1.25
1jmmA01 71.56 Major cell-surface adhesin PAcStreptococcus mutans 1.20.5.250 32 15 37 1.24 3.31
2oarE02 71.34 Large conductance mechanosensitive channel, MscL familyLarge-conductance mechanosensitive channelMycobacterium tuberculosis H37Ra 1.20.5.220 22 9 32 0.52 1.58
1mqsB00 70.02 Vesicle fusionSyntaxin 5SNAP receptor activityER to Golgi vesicle-mediated transportRetrograde vesicle-mediated transport, Golgi to ER 1.20.5.460 26 15 40 1.62 3.99
1s3jB01 69.78 Bacillus subtilisUncharacterized HTH-type transcriptional regulator yusO 1.20.5.420 30 3 34 1.65 4.80
1a02F00 69.77 Promoter bindingPathways in cancerChagas diseaseProto-oncogene protein c-fosB cell receptor signaling pathway 1.20.5.170 53 0 31 0.57 1.82
1h8bB00 69.45 TitinOryctolagus cuniculus 1.20.5.510 23 8 31 0.61 1.95
1be3K00 68.64 Cardiac muscle contractionCytochrome b-c1 complex subunit 10Oxidative phosphorylationParkinson's diseaseAlzheimer's disease 1.20.5.220 22 9 32 1.20 3.66
1fdoA05 68.34 Methane metabolismMetabolic pathwaysGlyoxylate and dicarboxylate metabolismFormate dehydrogenase HFormate dehydrogenase, alpha subunit [EC:1.2.1.2] 1.20.5.460 27 7 32 1.51 4.60
2pp6A01 67.98 Salmonella enterica subsp. enterica serovar TyphimuriumGifsy-2 prophage ATP-binding sugar transporter-like protein 1.20.5.110 21 4 32 1.13 3.44
1vf5C03 66.81 Mastigocladus laminosusApocytochrome f 1.20.5.700 32 0 28 0.49 1.74
2oarA02 66.38 Large conductance mechanosensitive channel, MscL familyLarge-conductance mechanosensitive channelMycobacterium tuberculosis H37Ra 1.20.5.220 17 11 26 0.52 1.96
3clqB01 63.72 Enterococcus faecalisPutative uncharacterized protein 1.20.5.220 24 12 25 0.69 2.76
2qiwA02 62.38 Corynebacterium glutamicumPEP phosphonomutase and related enzymes 1.20.5.510 18 0 25 0.55 2.20
1d66B02 62.31 Regulatory protein GAL4NucleusSequence-specific DNA binding transcription factor activityTranscription activator activityPositive regulation of transcription by galactose 1.20.5.640 15 20 23 0.38 1.62
1mslA02 61.81 1.20.5.220 18 5 28 1.32 4.69
1mkmA02 58.21 Thermotoga maritimaTranscriptional regulator, IclR family 1.20.5.640 14 7 21 0.62 2.83
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Displaying entries 1 to 80 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|3b5nJ00
AEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVK
BLAST against CATH

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Domain COMBS Sequence 

>pdb|3b5nJ00
ALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVKSAR
BLAST against CATH

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Domain History Events (8)

Domain assigned by auto on 04 Dec 2007 22:13

Assigning to "1.20.5.110" based on similarity with "3b5nB00"

Flow stage update by auto on 04 Dec 2007 22:13

No in_process hits for Domain "3b5nJ00" ready to be processed

Update comment by auto on 04 Dec 2007 18:13

Domain "3b5nJ00" hits Domain "3b5nB00" (100% over 100%) which is currently in process

Flow stage update by auto on 04 Dec 2007 18:04

Domain "3b5nJ00" hits Domain "3b5nB00" (100% over 100%) which is currently in process

Flow stage update by auto on 04 Dec 2007 18:04

NW result present for Domain "3b5nJ00"

Flow stage update by auto on 25 Nov 2007 06:34

All required files are present for Domain "3b5nJ00"

Flow stage update by auto on 24 Nov 2007 19:48

Beginning processing for Domain "3b5nJ00"

Insertion by auto on 24 Nov 2007 18:05

Final ChopClose added based on similarity with "3b5nB"