CATH Domain: 3b5nJ00 XML data for domain: 3b5nJ00

Molscript image for 3b5nJ00
3b5nJ00
PDB coordinates for domain 3b5nJ00

PDB 3b5n, Chain J, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.20 Up-down Bundle
1.20.5 Single alpha-helices involved in coiled-coils or other helix-helix interfaces
1.20.5.110 Gene3D
1.20.5.110.4
1.20.5.110.4.1
1.20.5.110.4.1.1
1.20.5.110.4.1.1.1
1.20.5.110.4.1.1.1.1

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Segment boundaries for domain 3b5nJ00

Chopping figure for domain 3b5nJ00
DomainStart PDB ResidueStop PDB Residue
3b5nJ00 191 254

Structural Neighbourhood (60 entries)

There are 60 matching structural neighberhood comparisons for CATH ID 1.20.5.110.4.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 60 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1jthB00 91.33 Protein bindingActomyosinMyosin head/neck bindingRattus norvegicusSynaptic vesicle docking during exocytosis 1.20.5.110 67 48 95 1.52 1.59
1gl2B00 91.32 Mus musculusIntegral to plasma membraneSyntaxin-7Vacuole organization and biogenesisVesicle-mediated transport 1.20.5.110 59 27 92 1.11 1.20
1l2pA00 85.75 Oxidative phosphorylationATP synthase B chainATP synthaseEscherichia coli K12F-type H+-transporting ATPase b chain 1.20.5.620 61 9 71 1.71 2.38
1gl2A00 85.34 Rattus norvegicusProtein complex assemblyVesicle-associated membrane protein 8 (endobrevin)Vesicle-associated membrane protein 8SNARE interactions in vesicular transport 1.20.5.110 53 5 82 1.90 2.29
1ik7A00 84.64 Regulation of proteolysisProbable serine/threonine-protein kinase pelleProtein-serine/threonine kinaseDefense responseHemopoiesis 1.20.5.530 52 7 81 2.63 3.24
1ezjA02 84.55 Sendai virus (strain Harris)Phosphoprotein 1.10.287.340 52 7 73 3.04 4.14
1no4C00 84.42 Bacillus phage phi29Head morphogenesis protein 1.20.5.400 73 9 75 1.78 2.36
1gd2F00 83.98 Fungal AP-1-like factorNucleusTranscription factor activityResponse to hydrogen peroxideResponse to methylglyoxal 1.20.5.170 64 6 82 2.08 2.51
1g2cA00 83.52 Human respiratory syncytial virus strain RSS-2Fusion glycoprotein F0 precursor 1.20.5.300 50 6 78 2.89 3.70
1jnmA00 83.43 1.20.5.170 56 8 76 1.98 2.59
2basA02 82.68 Bacillus subtilisYkuI protein 1.20.5.170 46 4 71 2.18 3.03
1fu1A02 82.28 NucleusDouble-strand break repair via nonhomologous end joiningDNA damage responseDNA-repair protein XRCC4Protein C-terminus binding 1.20.5.370 57 5 70 2.48 3.53
1urqC00 82.27 SNARE interactions in vesicular transportProtein bindingSyntaxin-1 bindingSynaptic transmissionNeurotransmitter secretion 1.20.5.110 68 4 63 1.13 1.79
1jekA00 82.02 Envelope glycoprotein gp160 precursorVisna/maedi virus EV1 KV1772 1.20.5.440 40 15 60 1.29 2.12
1m56D00 81.96 Rhodobacter sphaeroidesAa3-type cytochrome c oxidase subunit IV 1.20.5.160 42 9 65 2.04 3.11
1gl2D00 81.95 Syntaxin-8Rattus norvegicusProtein bindingSyntaxin 8SNARE interactions in vesicular transport 1.20.5.110 54 5 78 3.63 4.65
1kilE00 81.76 Synaptic vesicle exocytosisComplexin-1Neurotransmitter transporter activityRattus norvegicusSNARE binding 1.20.5.580 41 9 57 2.30 3.98
1llmD02 81.66 Transcription factor activityDNA bindingPositive regulation of gene-specific transcription involved in unfolded protein responseNucleusAmino acid biosynthetic process 3.30.160.60 55 1 50 0.69 1.38
2r9iA00 81.62 Putative phage capsid proteinCorynebacterium diphtheriae 1.10.287.80 69 4 56 1.76 3.11
2p7jB01 81.57 Vibrio parahaemolyticusPutative sensory box/GGDEF family protein 1.20.5.170 39 7 59 1.98 3.33
1uixA00 81.45 Rho-associated, coiled-coil containing protein kinaseLeukocyte transendothelial migrationWnt signaling pathwayTGF-beta signaling pathwayBos taurus 1.20.5.730 68 10 70 2.34 3.31
1gk6A00 81.45 Protein bindingCell CommunicationCytoskeletonCell motilityIntermediate filament 1.20.5.170 55 5 59 1.51 2.54
1jocA01 81.38 Membrane fractionZinc ion bindingVesicle fusionProtein homodimerization activityGTP-dependent protein binding 1.20.5.390 60 5 54 1.11 2.03
1gl2C00 81.22 Mus musculusVesicle transport through interaction with t-SNAREs homolog 1BGolgi apparatusProtein binding 1.20.5.110 59 8 53 0.89 1.68
1pfiA00 81.04 Pseudomonas phage Pf1Coat protein B precursor 1.20.5.230 46 6 70 2.72 3.87
1jcdB00 80.65 Major outer membrane lipoprotein precursorPeptidoglycan bindingMembrane fractionMurein lipoprotein lipoproteinEscherichia coli K12 1.20.5.190 52 3 56 1.44 2.56
1svfC00 80.44 Simian virus 5 (strain W3)Fusion glycoprotein F0 precursor 1.20.5.300 62 1 56 1.33 2.36
1ik9B02 80.32 NucleusDouble-strand break repair via nonhomologous end joiningDNA damage responseResponse to X-rayDNA-dependent protein kinase complex 1.20.5.370 83 9 69 3.49 4.99
1l4aA00 80.24 SynaptobrevinLoligo pealei 1.20.5.110 66 1 65 1.96 3.01
1ci6A00 79.52 Positive regulation of transcription from RNA polymerase II promoterTranscription factor activityActivating transcription factor 4Response to stressProstate cancer 1.20.5.170 56 7 50 0.79 1.58
2ifoA00 79.17 Coat protein BXanthomonas phage Xf 1.20.5.230 46 4 65 2.73 4.16
1favA00 78.54 Human immunodeficiency virus type 1 (BRU ISOLATE)Envelope glycoprotein gp160 precursor 1.10.287.210 78 9 60 2.01 3.34
1aa0A00 78.49 Enterobacteria phage T4Fibritin 1.20.5.320 113 10 54 1.38 2.52
1dp5B00 77.95 Endopeptidase inhibitor activityCytoplasmic and nuclear protein degradationRegulation by binding / dissociationProtease inhibitorVacuolar protein degradation 1.20.5.140 31 16 48 1.22 2.52
1u57A00 77.70 Human immunodeficiency virus type 1 lw12.3 isolateGag polyprotein 1.20.5.760 48 6 70 2.70 3.84
1g2cH00 77.38 Human respiratory syncytial virus strain RSS-2Fusion glycoprotein F0 precursor 1.20.5.310 37 10 50 1.88 3.76
1ic2B00 77.37 Gallus gallusTropomyosin alpha-1 chain 1.20.5.340 77 7 44 1.58 3.58
1junA00 77.14 B cell receptor signaling pathwayT cell receptor signaling pathwayErbB signaling pathwayMAPK signaling pathwayWnt signaling pathway 1.20.5.170 43 4 51 1.51 2.93
1omiA02 76.40 CytoplasmDisease, virulence and defenseListeria monocytogenesTranscription activationListeriolysin regulatory protein 1.20.5.460 27 7 39 0.53 1.36
1gk4C00 76.32 Protein bindingCell CommunicationCytoskeletonCell motilityIntermediate filament 1.20.5.170 70 1 44 2.02 4.56
1gmjB00 75.67 Bos taurusATPase inhibitor, mitochondrial precursorNegative regulation of hydrolase activityProtein homodimerization activityCalmodulin binding 1.20.5.500 60 3 40 0.50 1.23
1kv4A00 75.53 Bombyx moriMoricin-1 precursor 1.20.5.750 42 7 57 2.43 4.20
1nwqA00 75.47 1.20.5.170 60 1 46 1.55 3.31
1tiiC00 73.35 1.20.5.200 36 2 37 1.46 3.89
1v54K00 73.09 Bos taurusCytochrome c oxidase polypeptide VIIb, mitochondrial precursor 4.10.51.10 49 4 50 2.30 4.60
2r44A01 72.03 Cytophaga hutchinsonii ATCC 33406MoxR-like ATPasePutative uncharacterized protein 1.20.5.420 26 11 40 1.08 2.66
1piqA00 72.02 Transcription factor activityDNA bindingPositive regulation of gene-specific transcription involved in unfolded protein responseNucleusAmino acid biosynthetic process 1.20.5.170 31 3 32 0.41 1.25
1t72D02 71.67 Phosphate transport system protein phoU homologPhosphate transport system proteinAquifex aeolicus 1.20.58.220 105 3 34 0.98 2.86
2oarE02 71.34 Large conductance mechanosensitive channel, MscL familyLarge-conductance mechanosensitive channelMycobacterium tuberculosis 1.20.5.220 22 9 32 0.52 1.58
2p10A02 71.32 Mesorhizobium lotiMll9387 protein 1.20.5.460 25 8 37 1.40 3.73
1mqsB00 70.02 Vesicle fusionER to Golgi transportSNAP receptor activitySyntaxin 5Intra Golgi transport 1.20.5.460 26 15 40 1.62 3.99
1a02F00 69.77 1.20.5.170 53 0 31 0.57 1.82
1h8bB00 69.45 TitinOryctolagus cuniculus 1.20.5.510 23 8 31 0.61 1.95
1be3K00 68.64 Cytochrome b-c1 complex subunit 10Oxidative phosphorylationBos taurusUbiquinol-cytochrome c reductase subunit 10 1.20.5.220 22 9 32 1.20 3.66
2pp6A01 67.98 Salmonella typhimuriumGifsy-2 prophage ATP-binding sugar transporter-like protein 1.20.5.110 21 4 32 1.13 3.44
1vf5C03 66.81 Mastigocladus laminosusApocytochrome f 1.20.5.700 32 0 28 0.49 1.74
2oarA02 66.38 Large conductance mechanosensitive channel, MscL familyLarge-conductance mechanosensitive channelMycobacterium tuberculosis 1.20.5.220 17 11 26 0.52 1.96
3clqB01 63.72 Enterococcus faecalisPutative uncharacterized protein 1.20.5.220 24 12 25 0.69 2.76
2qiwA02 62.38 Corynebacterium glutamicumPEP phosphonomutase and related enzymes 1.20.5.510 18 0 25 0.55 2.20
1mkmA02 58.21 Thermotoga maritimaTranscriptional regulator, IclR family 1.20.5.640 14 7 21 0.62 2.83
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Displaying entries 1 to 60 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|3b5nJ00
AEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVK
BLAST against CATH

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Domain COMBS Sequence 

>pdb|3b5nJ00
ALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVKSAR
BLAST against CATH

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Domain History Events (8)

Domain assigned by auto on 04 Dec 2007 22:13

Assigning to "1.20.5.110" based on similarity with "3b5nB00"

Flow stage update by auto on 04 Dec 2007 22:13

No in_process hits for Domain "3b5nJ00" ready to be processed

Update comment by auto on 04 Dec 2007 18:13

Domain "3b5nJ00" hits Domain "3b5nB00" (100% over 100%) which is currently in process

Flow stage update by auto on 04 Dec 2007 18:04

Domain "3b5nJ00" hits Domain "3b5nB00" (100% over 100%) which is currently in process

Flow stage update by auto on 04 Dec 2007 18:04

NW result present for Domain "3b5nJ00"

Flow stage update by auto on 25 Nov 2007 06:34

All required files are present for Domain "3b5nJ00"

Flow stage update by auto on 24 Nov 2007 19:48

Beginning processing for Domain "3b5nJ00"

Insertion by auto on 24 Nov 2007 18:05

Final ChopClose added based on similarity with "3b5nB"