CATH Domain: 3b5nA00 XML data for domain: 3b5nA00

Molscript image for 3b5nA00
3b5nA00
PDB coordinates for domain 3b5nA00

PDB 3b5n, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.20 Up-down Bundle
1.20.5 Single alpha-helices involved in coiled-coils or other helix-helix interfaces
1.20.5.110 Gene3D
1.20.5.110.5
1.20.5.110.5.1
1.20.5.110.5.1.1
1.20.5.110.5.1.1.1
1.20.5.110.5.1.1.1.1

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Segment boundaries for domain 3b5nA00

Chopping figure for domain 3b5nA00
DomainStart PDB ResidueStop PDB Residue
3b5nA00 26 86

Structural Neighbourhood (88 entries)

There are 88 matching structural neighberhood comparisons for CATH ID 1.20.5.110.5.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 88 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1gl2A00 90.39 Rattus norvegicusProtein complex assemblyVesicle-associated membrane protein 8Cellular membrane fusionVesicle-associated membrane protein 8 1.20.5.110 53 9 85 0.93 1.09
1l4aA00 89.29 SynaptobrevinLoligo pealei 1.20.5.110 66 32 92 1.01 1.09
1gd2F00 88.64 NuA4 histone acetyltransferase complexFungal AP-1-like factorResponse to hydrogen peroxideResponse to methylglyoxalCellular response to oxidative stress 1.20.5.170 64 11 89 1.78 2.00
1uixA00 88.30 Chemokine signaling pathwayRho-associated, coiled-coil containing protein kinase [EC:2.7.11.1]Leukocyte transendothelial migrationWnt signaling pathwayTGF-beta signaling pathway 1.20.5.730 68 4 86 1.48 1.71
1sfcH00 88.25 SNARE interactions in vesicular transportSleepRattus norvegicusRegulation of synaptogenesisVoltage-gated potassium channel complex 1.20.5.110 72 13 84 0.78 0.92
1jthB00 88.19 Protein domain specific bindingMyosin head/neck bindingActomyosinRattus norvegicusProtein heterodimerization activity 1.20.5.110 67 8 91 2.06 2.26
1l2pA00 87.11 Oxidative phosphorylationMetabolic pathwaysATP synthesis coupled proton transportAnchored to membraneF-type H+-transporting ATPase subunit b [EC:3.6.3.14] 1.20.5.620 61 4 90 2.84 3.15
1ybkA00 86.69 TetrabrachionStaphylothermus marinus 1.20.5.1060 52 9 85 2.29 2.69
1gl2D00 86.61 Syntaxin-8Rattus norvegicusProtein bindingSyntaxin 8SNARE interactions in vesicular transport 1.20.5.110 54 12 72 1.25 1.73
1t3jA00 86.33 Mus musculusMitochondrial fusionMitofusin-1Protein binding 1.20.5.110 62 4 90 3.73 4.13
2w83C00 86.14 Homo sapiensIntegral to membraneC-Jun-amino-terminal kinase-interacting protein 4SpermatogenesisPositive regulation of cell migration 1.20.5.1000 67 8 83 2.01 2.40
3gwoA00 86.06 Human immunodeficiency virus type 1 lw12.3 isolateEnvelope glycoprotein gp160 1.10.287.210 53 7 78 1.93 2.45
3e7kA00 85.66 Rattus norvegicusCalcium channel activityCalcium ion transportIntegral to membraneProtein binding 1.20.5.1010 54 0 60 0.63 1.04
1gl2B00 85.64 Mus musculusSyntaxin-7 1.20.5.110 59 8 86 2.80 3.22
2b9bA04 85.26 Simian virus 5 (strain W3)Fusion glycoprotein F0 1.20.5.1070 62 8 87 3.03 3.48
1junA00 85.21 Pathways in cancerChagas diseaseNeurotrophin signaling pathwayB cell receptor signaling pathwayT cell receptor signaling pathway 1.20.5.170 43 9 70 1.47 2.09
1n2dC00 84.88 Mating projection tipGolgi inheritanceActin filament bindingVesicle-mediated transportMyosin-2 1.20.5.190 48 8 63 0.95 1.49
1kilE00 84.83 Complexin-1Syntaxin-1 bindingRattus norvegicusDendriteSynaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex 1.20.5.580 41 9 67 1.46 2.17
1ezjA02 84.26 Sendai virus (strain Harris)Phosphoprotein 1.10.287.340 52 5 62 1.01 1.62
1gk4C00 84.14 Cellular component movementProtein C-terminus bindingIntermediate filamentVimentinCytosol 1.20.5.170 70 6 87 3.14 3.60
2p2uA01 83.65 Desulfovibrio vulgaris str. HildenboroughHost-nuclease inhibitor protein Gam, putative 1.20.5.170 69 9 88 2.51 2.84
1ci6A00 83.63 Positive regulation of transcription from RNA polymerase II promoterCellular amino acid metabolic processNeurotrophin signaling pathwayActivating transcription factor 4Sequence-specific DNA binding transcription factor activity 1.20.5.170 56 3 62 1.11 1.78
1jcdB00 83.56 Peptidoglycan bindingMurein lipoproteinMajor outer membrane lipoprotein LppProtein bindingEscherichia coli K-12 1.20.5.190 52 11 73 2.32 3.14
1gk6B00 83.48 Positive regulation of RNA polymerase II transcriptional preinitiation complex assemblyIntermediate filamentVimentinCytosolPositive regulation of gene-specific transcription from RNA polymerase II promoter 1.20.5.170 52 5 62 1.43 2.30
1gl2C00 83.47 Mus musculusVesicle transport through interaction with t-SNAREs homolog 1BGolgi apparatusProtein binding 1.20.5.110 59 8 80 3.01 3.75
3kpeA00 83.42 Fusion glycoprotein F0Human respiratory syncytial virus A2 1.20.5.300 47 10 77 3.46 4.49
1ik9B02 83.41 DNA ligation involved in DNA repairResponse to X-rayDNA-dependent protein kinase-DNA ligase 4 complexProtein C-terminus bindingDouble-strand break repair via nonhomologous end joining 1.20.5.370 83 16 73 2.49 3.39
1nwqA00 82.77 Protein domain specific bindingRattus norvegicusAcute-phase responsePathways in cancerOrgan regeneration 1.20.5.170 60 8 83 3.15 3.77
1jnmA00 82.74 Pathways in cancerChagas diseaseNeurotrophin signaling pathwayB cell receptor signaling pathwayT cell receptor signaling pathway 1.20.5.170 56 5 75 3.05 4.04
1a02F00 82.68 Promoter bindingPathways in cancerChagas diseaseProto-oncogene protein c-fosB cell receptor signaling pathway 1.20.5.170 53 3 77 2.77 3.60
1ik7A00 82.23 Regulation of proteolysisProtein domain specific bindingHemocyte proliferationPlasma membraneZygotic specification of dorsal/ventral axis 1.20.5.530 52 7 68 2.70 3.92
2zvoB00 82.19 Mus musculusNF-kappa-B essential modulatorActivation of NF-kappaB-inducing kinase activityB cell homeostasis 1.20.5.990 88 9 69 1.63 2.35
3ii6A02 82.09 DNA ligation involved in DNA repairProtein C-terminus bindingDNA-dependent protein kinase-DNA ligase 4 complexResponse to X-rayDouble-strand break repair via nonhomologous end joining 1.20.5.370 58 10 63 1.60 2.50
2e42A00 81.95 Transcription from RNA polymerase II promoterAcute-phase responseHomo sapiensCCAAT/enhancer-binding protein betaImmune response 1.20.5.170 65 9 61 1.45 2.36
1gu4A00 81.70 Transcription from RNA polymerase II promoterAcute-phase responseHomo sapiensCCAAT/enhancer-binding protein betaImmune response 1.20.5.170 65 9 61 1.46 2.37
1jekA00 81.54 Visna/maedi virus EV1 KV1772Envelope glycoprotein gp160 1.20.5.440 40 7 65 2.29 3.49
2wpqA00 81.39 Salmonella enterica subsp. enterica serovar TyphimuriumPutative inner membrane protein 1.20.5.980 99 8 61 1.86 3.02
1dp5B00 80.83 CytoplasmProtease A inhibitor 3Saccharomyces cerevisiaeVacuolar protein catabolic processProtein binding 1.20.5.140 31 6 50 0.69 1.36
3efgA00 80.33 Xanthomonas campestris pv. campestrisSlyX proteinProtein slyX homolog 1.20.5.300 49 8 72 3.01 4.17
2zxeB01 80.11 1.20.5.170 35 14 57 2.02 3.52
1ifpA00 80.06 Pseudomonas phage Pf3Capsid protein G8P 1.20.5.440 44 9 63 2.59 4.05
1g2cB00 80.02 Human respiratory syncytial virus strain RSS-2Fusion glycoprotein F0 1.20.5.170 40 10 65 2.71 4.13
1no4C00 79.93 Bacillus phage phi29Head morphogenesis protein 1.20.5.400 73 4 61 2.02 3.28
2p7jB01 79.62 Vibrio parahaemolyticusPutative sensory box/GGDEF family protein 1.20.5.170 39 7 63 2.14 3.35
1u57A00 79.61 Human immunodeficiency virus type 1 lw12.3 isolateGag polyprotein 1.20.5.760 48 2 62 1.79 2.87
1tiiC00 79.57 Heat-labile enterotoxin IIB, A chainEscherichia coli 1.20.5.200 36 5 59 1.78 3.02
1jocA01 79.47 Zinc ion bindingVesicle fusionMembrane fractionSynaptic vesicle to endosome fusionProtein homodimerization activity 1.20.5.390 60 1 62 2.23 3.58
1favA00 79.12 NucleusPositive regulation of RNA polymerase II transcriptional preinitiation complex assemblyEnvelope glycoprotein gp160General control protein GCN4General control protein GCN4 1.10.287.210 78 4 48 1.00 2.05
1dh3A00 79.05 Positive regulation of multicellular organism growthLactationRegulation of cell sizeAxonogenesisMus musculus 1.20.5.170 55 7 55 1.24 2.22
1m56D00 78.70 Rhodobacter sphaeroidesAa3-type cytochrome c oxidase subunit IV 1.20.5.160 42 9 57 2.35 4.10
3hd7B00 78.58 Myosin head/neck bindingActomyosinProtein domain specific bindingRattus norvegicusProtein heterodimerization activity 1.20.5.110 98 11 62 3.11 5.00
1r8eA03 78.53 Multidrug-efflux transporter 1 regulatorBacillus subtilis 1.20.5.490 44 2 54 1.65 3.05
1czqA00 78.27 1.20.5.170 45 6 42 0.44 1.03
1s5lX00 77.64 Photosystem II reaction center X proteinThermosynechococcus elongatus BP-1 1.20.5.510 40 5 49 2.22 4.51
1piqA00 77.60 NucleusPositive regulation of RNA polymerase II transcriptional preinitiation complex assemblyGeneral control protein GCN4General control protein GCN4Specific RNA polymerase II transcription factor activity 1.20.5.170 31 3 50 1.41 2.77
1ic2B00 77.60 Gallus gallusTropomyosin alpha-1 chain 1.20.5.340 77 11 51 2.03 3.91
1kqfB03 77.21 Two-component systemMetabolic pathwaysGlyoxylate and dicarboxylate metabolismMethane metabolismFormate dehydrogenase activity 1.20.5.480 44 4 54 1.88 3.48
3effK02 77.00 Streptomyces lividansVoltage-gated potassium channel 1.20.5.440 45 8 49 1.51 3.07
2dw3A01 76.97 Intrinsic membrane protein pufXRhodobacter sphaeroides 2.4.1 1.20.5.920 55 5 57 2.71 4.72
2hr3A01 76.88 Probable transcriptional regulatorPseudomonas aeruginosa 1.20.5.420 30 3 49 1.91 3.88
2k37A00 76.61 Bacteriochlorophyll c-binding proteinChlorobaculum tepidumChlorosome envelope protein A 1.20.5.950 59 6 49 1.33 2.70
2gr7A00 76.57 Haemophilus influenzaeAdhesin 3.30.1300.30 101 8 44 1.90 4.26
1gmjD00 76.46 Negative regulation of hydrolase activityProtein homodimerization activityATPase inhibitor activityBos taurusCalmodulin binding 1.20.5.500 56 5 47 2.27 4.77
1owaA01 76.26 Structural constituent of cytoskeletonSpectrinHomo sapiensSpectrin-associated cytoskeletonActin filament organization 1.20.5.170 32 18 52 2.48 4.73
2basA02 75.39 Bacillus subtilisUncharacterized EAL-domain containing protein ykuI 1.20.5.170 46 4 45 2.01 4.38
1a2xB00 74.89 Troponin I, fast skeletal muscleTroponin T bindingOryctolagus cuniculus 1.20.5.420 31 12 40 1.03 2.51
1qexA01 74.52 Enterobacteria phage T4Baseplate structural protein Gp9 1.20.5.960 35 11 44 1.94 4.38
1omiA02 74.50 Listeria monocytogenesListeriolysin regulatory protein 1.20.5.460 27 3 44 1.28 2.89
1vf5C03 74.44 Mastigocladus laminosusApocytochrome f 1.20.5.700 32 3 36 0.50 1.39
1pl5A00 74.42 Chromatin silencing complexLoss of chromatin silencing involved in replicative cell agingChromatin silencingDouble-strand break repair via nonhomologous end joiningDouble-stranded DNA binding 1.20.5.730 75 6 42 1.25 2.93
1jmmA01 74.34 Major cell-surface adhesin PAcStreptococcus mutans 1.20.5.250 32 12 52 2.47 4.71
1fdoA05 74.34 Methane metabolismMetabolic pathwaysGlyoxylate and dicarboxylate metabolismFormate dehydrogenase HFormate dehydrogenase, alpha subunit [EC:1.2.1.2] 1.20.5.460 27 3 44 1.84 4.16
2pjuD03 73.69 Positive regulation of gene-specific transcriptionPropionate catabolism operon regulatory proteinNegative regulation of gene-specific transcriptionEscherichia coli K-12Specific transcriptional repressor activity 1.20.5.170 41 4 37 0.75 1.99
1kv4A00 72.24 Moricin-1Bombyx mori 1.20.5.750 42 19 47 2.36 4.96
2p1jB02 70.97 Thermotoga maritimaPyrimidine metabolismDNA replicationPurine metabolismMetabolic pathways 1.20.5.140 26 11 31 0.43 1.38
2oarE02 70.84 Large conductance mechanosensitive channel, MscL familyLarge-conductance mechanosensitive channelMycobacterium tuberculosis H37Ra 1.20.5.220 22 13 36 1.34 3.72
1hf9A00 70.26 Protein homodimerization activityNegative regulation of hydrolase activityATPase inhibitor activityBos taurusATPase binding 1.20.5.500 41 4 32 0.71 2.17
1mqsB00 69.97 Vesicle fusionSyntaxin 5SNAP receptor activityER to Golgi vesicle-mediated transportRetrograde vesicle-mediated transport, Golgi to ER 1.20.5.460 26 7 42 2.09 4.90
1be3K00 69.23 Cardiac muscle contractionCytochrome b-c1 complex subunit 10Oxidative phosphorylationParkinson's diseaseAlzheimer's disease 1.20.5.220 22 9 32 0.91 2.78
1h8bB00 68.97 TitinOryctolagus cuniculus 1.20.5.510 23 8 34 1.26 3.66
3g67A00 68.95 Thermotoga maritimaMethyl-accepting chemotaxis protein, putative 1.10.287.950 213 9 28 1.11 3.88
2pp6A01 68.93 Salmonella enterica subsp. enterica serovar TyphimuriumGifsy-2 prophage ATP-binding sugar transporter-like protein 1.20.5.110 21 4 34 1.14 3.31
3l4jA05 67.82 Reciprocal meiotic recombinationDNA topoisomerase 2Regulation of mitotic recombinationDNA topoisomerase II [EC:5.99.1.3]DNA strand elongation involved in DNA replication 1.10.268.10 153 1 25 0.61 2.39
2oarA02 67.34 Large conductance mechanosensitive channel, MscL familyLarge-conductance mechanosensitive channelMycobacterium tuberculosis H37Ra 1.20.5.220 17 5 27 0.49 1.76
2qiwA02 65.74 Corynebacterium glutamicumPEP phosphonomutase and related enzymes 1.20.5.510 18 16 29 0.80 2.71
1mslA02 63.84 1.20.5.220 18 16 29 1.42 4.81
3c8vA04 63.32 Desulfovibrio desulfuricans subsp. desulfuricans str. G20Putative uncharacterized protein 1.20.5.510 19 10 24 0.59 2.40
1d66B02 62.74 Regulatory protein GAL4NucleusSequence-specific DNA binding transcription factor activityTranscription activator activityPositive regulation of transcription by galactose 1.20.5.640 15 13 24 0.46 1.87
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Displaying entries 1 to 88 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|3b5nA00
GSRTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRVRKAMW
BLAST against CATH

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Domain COMBS Sequence 

>pdb|3b5nA00
GSRTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRVRKAMW
BLAST against CATH

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Domain History Events (6)

Domain assigned by auto on 04 Dec 2007 18:13

Assigning to "1.20.5.110" based on similarity with "1kilA00"

Flow stage update by auto on 04 Dec 2007 18:04

No in_process hits for Domain "3b5nA00" ready to be processed

Flow stage update by auto on 04 Dec 2007 18:04

NW result present for Domain "3b5nA00"

Flow stage update by auto on 25 Nov 2007 06:34

All required files are present for Domain "3b5nA00"

Flow stage update by auto on 24 Nov 2007 14:37

Beginning processing for Domain "3b5nA00"

Insertion by auto on 24 Nov 2007 14:11

Final ChopClose added based on similarity with "1kilA"