CATH Domain: 2zp1A01 XML data for domain: 2zp1A01

Molscript image for 2zp1A01
2zp1A01
PDB coordinates for domain 2zp1A01

PDB 2zp1, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.620 Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1 Gene3D
3.40.50.620.3
3.40.50.620.3.1
3.40.50.620.3.1.1
3.40.50.620.3.1.1.1
3.40.50.620.3.1.1.1.1

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Segment boundaries for domain 2zp1A01

Chopping figure for domain 2zp1A01
DomainStart PDB ResidueStop PDB Residue
2zp1A01 1 196
2zp1A02 197 308

Structural Neighbourhood (12 entries)

There are 12 matching structural neighberhood comparisons for CATH ID 3.40.50.620.3.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 12 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2cyaA01 91.16 Aeropyrum pernixTyrosyl-tRNA synthetase 3.40.50.620 205 40 93 2.52 2.69
1h3fB01 86.49 Aminoacyl-tRNA biosynthesisThermus thermophilus HB27Tyrosyl-tRNA synthetaseTyrosyl-tRNA synthetase [EC:6.1.1.1] 3.40.50.620 203 23 92 2.75 2.97
1wq4A01 82.77 Aminoacyl-tRNA biosynthesisMembraneTyrosyl-tRNA synthetaseTyrosyl-tRNA synthetase [EC:6.1.1.1]Escherichia coli K-12 3.40.50.620 226 16 86 3.24 3.76
1i6kA01 82.51 Geobacillus stearothermophilusTryptophanyl-tRNA synthetase 3.40.50.620 208 15 76 3.50 4.55
2ip1A01 78.76 Tryptophan-tRNA ligase activityProtein bindingTryptophanyl-tRNA synthetase, cytoplasmicAminoacyl-tRNA biosynthesisCytoplasm 3.40.50.620 242 12 77 3.17 4.10
3focA01 77.38 Aminoacyl-tRNA biosynthesisTryptophanyl-tRNA synthetase [EC:6.1.1.2]Giardia lamblia ATCC 50803Tryptophanyl-tRNA synthetaseTryptophan metabolism 3.40.50.620 285 19 66 2.93 4.42
1j09A01 76.60 Aminoacyl-tRNA biosynthesisThermus thermophilus HB8Porphyrin and chlorophyll metabolismGlutamyl-tRNA synthetase [EC:6.1.1.17]Glutamyl-tRNA synthetase 3.40.50.620 121 16 58 2.05 3.52
1y42X01 76.52 Aminoacyl-tRNA biosynthesisTyrosyl-tRNA synthetase [EC:6.1.1.1]Neurospora crassaTyrosyl-tRNA synthetase, mitochondrial 3.40.50.620 267 18 73 3.62 4.96
1qtqA05 76.27 Aminoacyl-tRNA biosynthesisMetabolic pathwaysGlutaminyl-tRNA synthetaseGlutamine-tRNA ligase activityGlutaminyl-tRNA aminoacylation 3.40.50.620 123 15 58 2.07 3.53
1cozA00 75.54 Bacillus subtilisGlycerophospholipid metabolismGlycerol-3-phosphate cytidylyltransferaseGlycerol-3-phosphate cytidylyltransferase [EC:2.7.7.39] 3.40.50.620 126 11 57 2.83 4.91
3glvA00 74.08 Thermoplasma volcanium GSS1Lipopolysaccharide core biosynthesis proteinGlycerophospholipid metabolismGlycerol-3-phosphate cytidylyltransferase [EC:2.7.7.39] 3.40.50.620 122 13 59 2.91 4.87
2d5bA01 73.71 Aminoacyl-tRNA biosynthesisThermus thermophilus HB8Selenoamino acid metabolismMethionyl-tRNA synthetaseMethionyl-tRNA synthetase [EC:6.1.1.10] 3.40.50.620 225 8 63 3.02 4.75
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Displaying entries 1 to 12 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2zp1A01
MDEFEMIKRNTSEIISEEELREVLKKDEKSAYIGFEPSGKIHLGHYLQIKKMIDLQNAGFDIIILLADLAAYLNQKGELD
EIRKIGDYNKKVFEAMGLKAKYVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMELIAREDENPKVAEVIYPIMQVNTSH
YLGVDVAVGGMEQRKIHMLARELLPKKVVCIHNPVL
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2zp1A01
MDEFEMIKRNTSEIISEEELREVLKKDEKSAYIGFEPSGKIHLGHYLQIKKMIDLQNAGFDIIILLADLAAYLNQKGELD
EIRKIGDYNKKVFEAMGLKAKYVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMELIAREDENPKVAEVIYPIMQVNTSH
YLGVDVAVGGMEQRKIHMLARELLPKKVVCIHNPVL
BLAST against CATH

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Domain History Events (6)

Domain assigned by auto on 06 Mar 2009 00:32

Assigning to "3.40.50.620" based on similarity with "1j1uA01"

Flow stage update by auto on 05 Mar 2009 23:29

No in_process hits for Domain "2zp1A01" ready to be processed

Flow stage update by auto on 05 Mar 2009 23:29

NW result present for Domain "2zp1A01"

Flow stage update by auto on 04 Mar 2009 11:45

All required files are present for Domain "2zp1A01"

Flow stage update by auto on 03 Mar 2009 20:57

Beginning processing for Domain "2zp1A01"

Insertion by auto on 03 Mar 2009 17:37

Final ChopClose added based on similarity with "1zh6A"