CATH Domain: 2zkoA00 XML data for domain: 2zkoA00

Molscript image for 2zkoA00
2zkoA00
PDB coordinates for domain 2zkoA00

PDB 2zko, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.287 Helix Hairpins
1.10.287.10 Gene3D
1.10.287.10.2
1.10.287.10.2.1
1.10.287.10.2.1.1
1.10.287.10.2.1.1.1
1.10.287.10.2.1.1.1.1

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Segment boundaries for domain 2zkoA00

Chopping figure for domain 2zkoA00
DomainStart PDB ResidueStop PDB Residue
2zkoA00 1 70

Structural Neighbourhood (13 entries)

There are 13 matching structural neighberhood comparisons for CATH ID 1.10.287.10.2.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 13 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1nkdA00 84.47 Regulatory protein ropEscherichia coli 1.10.287.230 59 6 72 1.84 2.53
1jm0A00 84.42 1.20.5.420 48 8 68 1.73 2.52
3bz1Z00 83.73 PhotosynthesisThermosynechococcus elongatus BP-1Photosystem II reaction center protein ZPhotosystem II PsbZ proteinMetabolic pathways 1.10.287.740 62 4 67 1.90 2.83
2fb5A01 83.32 Bacillus cereus ATCC 14579Hypothetical Membrane Spanning Protein 1.10.287.770 72 5 72 2.75 3.81
1ta8A01 83.04 DNA ligase (NAD+) [EC:6.5.1.2]DNA replicationNucleotide excision repairBase excision repairDNA ligase 1.10.287.610 64 7 85 4.00 4.67
1ku9A02 82.62 DNA-binding protein MJ1563Methanocaldococcus jannaschii 1.10.287.450 63 6 67 1.83 2.73
1b04A03 81.46 Geobacillus stearothermophilusDNA ligase 1.10.287.610 62 6 87 4.34 4.98
1gaxA05 80.70 Aminoacyl-tRNA biosynthesisValyl-tRNA synthetase [EC:6.1.1.9]Valyl-tRNA synthetaseValine, leucine and isoleucine biosynthesisThermus thermophilus 1.10.287.380 73 7 64 2.58 4.01
2arhA02 78.67 Aquifex aeolicusPutative uncharacterized protein 1.10.287.870 40 0 57 2.56 4.48
1cpyA02 78.40 Phytochelatin biosynthetic processProtein bindingFungal-type vacuole lumenSerine-type carboxypeptidase activityCarboxypeptidase Y 1.10.287.410 72 1 70 3.42 4.83
2rjzA01 74.59 Pseudomonas aeruginosaType IV pilus assembly protein PilOPilO protein 1.10.287.540 36 8 48 2.20 4.53
2zinA01 72.84 Aminoacyl-tRNA biosynthesisMethanosarcina mazeiPyrrolysyl-tRNA synthetasePyrrolysyl-tRNA synthetase [EC:6.1.1.26] 1.10.287.540 48 4 37 1.59 4.28
3ce2A02 66.87 Oligoendopeptidase F [EC:3.4.24.-]Putative peptidaseChlamydophila abortus 1.10.287.830 47 2 28 0.70 2.45
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Displaying entries 1 to 13 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2zkoA00
MDPNTVSSFQVDCFLWHVRKRVADQELGDAPFLDRLRRDQKSLRGRGSTLGLDIETATRAGKQIVERILK
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2zkoA00
GSHMDPNTVSSFQVDCFLWHVRKRVADQELGDAPFLDRLRRDQKSLRGRGSTLGLDIETATRAGKQIVERILK
BLAST against CATH

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Domain History Events (6)

Domain assigned by auto on 18 Oct 2008 17:29

Assigning to "1.10.287.10" based on similarity with "2z0aA00"

Flow stage update by auto on 18 Oct 2008 17:09

No in_process hits for Domain "2zkoA00" ready to be processed

Flow stage update by auto on 18 Oct 2008 17:09

NW result present for Domain "2zkoA00"

Flow stage update by auto on 18 Oct 2008 11:11

All required files are present for Domain "2zkoA00"

Flow stage update by auto on 17 Oct 2008 11:12

Beginning processing for Domain "2zkoA00"

Insertion by auto on 17 Oct 2008 11:08

Final ChopClose added based on similarity with "2z0aA"