CATH Domain: 2zibA00 XML data for domain: 2zibA00

Molscript image for 2zibA00
2zibA00
PDB coordinates for domain 2zibA00

PDB 2zib, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.10 Roll
3.10.100 Mannose-Binding Protein A; Chain A
3.10.100.10 Mannose-Binding Protein A, subunit A Gene3D
3.10.100.10.1
3.10.100.10.1.1
3.10.100.10.1.1.1
3.10.100.10.1.1.1.1
3.10.100.10.1.1.1.1.1

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Segment boundaries for domain 2zibA00

Chopping figure for domain 2zibA00
DomainStart PDB ResidueStop PDB Residue
2zibA00 4 133

Structural Neighbourhood (24 entries)

There are 24 matching structural neighberhood comparisons for CATH ID 3.10.100.10.1.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 24 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1jznA00 91.40 Galactose-specific lectinCrotalus atrox 3.10.100.10 135 28 92 1.58 1.71
2h2tB01 91.16 Positive regulation of nitric-oxide synthase 2 biosynthetic processIntegral to plasma membraneHematopoietic cell lineagePositive regulation of nitric-oxide synthase activityPositive regulation of killing of cells of another organism 3.10.100.10 116 31 87 1.20 1.37
1wmzA00 91.15 Cucumaria echinataLectin CEL-I, N-acetyl-D-galactosamine-specific C-type 3.10.100.10 140 27 90 1.36 1.51
1qddA00 90.31 Positive regulation of cell proliferationHomo sapiensGrowth factor activityLithostathine-1-alpha 3.10.100.10 144 26 89 2.29 2.56
1gz2A00 89.57 Peptidoglycan bindingShell calcificationLipopolysaccharide bindingGram-positive bacterial cell surface bindingOvocleidin-17 3.10.100.10 138 26 87 1.58 1.80
1h8uB00 89.48 Bone marrow proteoglycanHomo sapiensBone marrow proteoglycanExtracellular regionSugar binding 3.10.100.10 116 22 83 1.87 2.23
1xphA00 89.19 Integral to plasma membraneCell-cell recognitionVirion attachment to host cell surface receptorVirion bindingHomo sapiens 3.10.100.10 139 25 91 2.09 2.29
1kza100 89.16 Rattus norvegicusMannose bindingProtein self-associationMannose-binding lectinMannose-binding protein C 3.10.100.10 115 22 87 1.64 1.87
1tn3A00 89.08 Skeletal system developmentHomo sapiensTetranectinProtein binding 3.10.100.10 135 18 91 2.19 2.40
3c22D00 88.50 Mannose bindingC-type lectin domain family 4 member KCD207 antigenHomo sapiensEndocytic vesicle 3.10.100.10 122 29 86 2.21 2.57
3hupA00 88.19 CD69 antigenIntegral to plasma membraneEarly activation antigen CD69Homo sapiensTransmembrane receptor activity 3.10.100.10 114 20 87 2.49 2.84
1ypqB00 87.66 Membrane fractionIntegral to plasma membraneHomo sapiensProteolysisOxidized low-density lipoprotein receptor 1 3.10.100.10 135 20 92 2.87 3.10
1byfA00 87.16 LectinPolyandrocarpa misakiensis 3.10.100.10 123 18 87 2.06 2.35
1g1tA01 86.99 Response to tumor necrosis factorCoated pitHeterophilic cell-cell adhesionPerinuclear region of cytoplasmPhospholipase binding 3.10.100.10 119 24 83 1.86 2.22
3g8kA00 86.60 Mus musculusPlasma membraneLectin-related NK cell receptor LY49L1 3.10.100.10 127 22 93 4.56 4.86
1rtm100 86.60 Calcium ion bindingMannose bindingRattus norvegicusProtein homodimerization activityExtracellular space 3.10.100.10 149 21 85 3.35 3.93
1hq8A00 86.56 Positive regulation of interferon-gamma productionPositive regulation of natural killer cell mediated cytotoxicityPositive regulation of nitric oxide biosynthetic processMHC class I protein bindingNatural killer cell activation 3.10.100.10 123 26 93 2.65 2.85
1pwbC00 86.03 Negative regulation of T cell proliferationProtein bindingInnate immune responseLung alveolus developmentEndocytic vesicle 3.10.100.10 150 20 83 3.74 4.49
1sl6A00 85.82 Integral to plasma membraneCell-cell recognitionVirion attachment to host cell surface receptorVirion bindingHomo sapiens 3.10.100.10 168 24 75 1.97 2.61
3bdwA00 85.81 Killer cell lectin-like receptor subfamily D, member 1Natural killer cell mediated cytotoxicityNatural killer cells antigen CD94Antigen processing and presentationGraft-versus-host disease 3.10.100.10 123 18 93 2.84 3.03
1eslA00 83.44 Response to tumor necrosis factorCoated pitHeterophilic cell-cell adhesionPerinuclear region of cytoplasmPhospholipase binding 3.10.100.10 157 24 71 2.01 2.82
1rjhA00 83.37 Skeletal system developmentHomo sapiensTetranectinProtein binding 3.10.100.10 118 17 82 2.33 2.83
1f00I03 76.24 Pathogenic Escherichia coli infectionIntiminIntiminProtein bindingEscherichia coli O127:H6 str. E2348/69 3.10.100.10 98 16 63 3.16 4.95
1cwvA05 74.72 InvasinYersinia pseudotuberculosis 3.10.100.10 100 9 63 2.83 4.49
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Displaying entries 1 to 24 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2zibA00
HHHALVCPAGWTLHGQRCFYSEATAMTWDLAEANCVNKGGHLASIHSLEEQLYIKDIVAGIVWIGGSACKVAGAWSWTDG
TPVDYRTWCPTKPNDILSDCCMQMTAAVDKCWDDLPCPASHASICAKAAI
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2zibA00
HHHHHHALVCPAGWTLHGQRCFYSEATAMTWDLAEANCVNKGGHLASIHSLEEQLYIKDIVAGIVWIGGSACKVAGAWSW
TDGTPVDYRTWCPTKPNDILSDCCMQMTAAVDKCWDDLPCPASHASICAKAAI
BLAST against CATH

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Domain History Events (6)

Domain assigned by auto on 26 Aug 2008 17:24

Assigning to "3.10.100.10" based on similarity with "2afpA00"

Flow stage update by auto on 26 Aug 2008 17:08

No in_process hits for Domain "2zibA00" ready to be processed

Flow stage update by auto on 26 Aug 2008 17:08

NW result present for Domain "2zibA00"

Flow stage update by auto on 26 Aug 2008 08:10

All required files are present for Domain "2zibA00"

Flow stage update by auto on 25 Aug 2008 11:31

Beginning processing for Domain "2zibA00"

Insertion by auto on 25 Aug 2008 11:10

Final ChopClose added based on similarity with "2afpA"