CATH Domain: 2yxtA00 XML data for domain: 2yxtA00

Molscript image for 2yxtA00
2yxtA00
PDB coordinates for domain 2yxtA00

PDB 2yxt, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.1190 UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase
3.40.1190.20 Gene3D
3.40.1190.20.13
3.40.1190.20.13.1
3.40.1190.20.13.1.1
3.40.1190.20.13.1.1.1
3.40.1190.20.13.1.1.1.1

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Segment boundaries for domain 2yxtA00

Chopping figure for domain 2yxtA00
DomainStart PDB ResidueStop PDB Residue
2yxtA00 3 312

Structural Neighbourhood (2 entries)

There are 2 matching structural neighberhood comparisons for CATH ID 3.40.1190.20.13.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 2 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1ub0A00 82.81 TransferaseThiamine metabolismHydroxymethylpyrimidine kinase [EC:2.7.1.49]Phosphomethylpyrimidine kinase [EC:2.7.4.7]Metabolic pathways 3.40.1190.20 246 21 80 2.78 3.46
2i5bA00 81.95 Thiamine metabolismBacillus subtilisPyridoxine kinasePhosphomethylpyrimidine kinase [EC:2.7.4.7]Metabolic pathways 3.40.1190.20 269 17 87 3.58 4.11
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Displaying entries 1 to 2 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2yxtA00
EECRVLSIQSHVIRGYVGNRAATFPLQVLGFEIDAVNSVQFSNHTGYAHWKGQVLNSDELQELYEGLRLNNMNKYDYVLT
GYTRDKSFLAMVVDIVQELKQQNPRLVYVCDPVLGDKGEGSMYVPEDLLPVYKEKVVPLADIITPNQFEAELLSGRKIHS
QEEALRVMDMLHSMGPDTVVITSSDLPSPQGSNYLIVLGSQRRGSVVMERIRMDIRKVDAVFVGTGDLFAAMLLAWTHKH
PNNLKVACEKTVSTLHHVLQRTIQCAKAQAGEGVRPSPMQLELRMVQSKRDIEDPEIVVQATVL
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2yxtA00
MEEECRVLSIQSHVIRGYVGNRAATFPLQVLGFEIDAVNSVQFSNHTGYAHWKGQVLNSDELQELYEGLRLNNMNKYDYV
LTGYTRDKSFLAMVVDIVQELKQQNPRLVYVCDPVLGDKWDGEGSMYVPEDLLPVYKEKVVPLADIITPNQFEAELLSGR
KIHSQEEALRVMDMLHSMGPDTVVITSSDLPSPQGSNYLIVLGSQRRRNPAGSVVMERIRMDIRKVDAVFVGTGDLFAAM
LLAWTHKHPNNLKVACEKTVSTLHHVLQRTIQCAKAQAGEGVRPSPMQLELRMVQSKRDIEDPEIVVQATVL
BLAST against CATH

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Domain History Events (6)

Domain assigned by auto on 15 Mar 2008 20:15

Assigning to "3.40.1190.20" based on similarity with "2ajpA00"

Flow stage update by auto on 15 Mar 2008 20:05

No in_process hits for Domain "2yxtA00" ready to be processed

Flow stage update by auto on 15 Mar 2008 20:05

NW result present for Domain "2yxtA00"

Flow stage update by auto on 15 Mar 2008 08:07

All required files are present for Domain "2yxtA00"

Flow stage update by auto on 14 Mar 2008 08:23

Beginning processing for Domain "2yxtA00"

Insertion by auto on 14 Mar 2008 08:15

Final ChopClose added based on similarity with "2ajpA"