CATH Domain: 2yvaA00 XML data for domain: 2yvaA00

Molscript image for 2yvaA00
2yvaA00
PDB coordinates for domain 2yvaA00

PDB 2yva, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.10490 Glucose-6-phosphate isomerase like protein; domain 1 Gene3D
3.40.50.10490.8
3.40.50.10490.8.1
3.40.50.10490.8.1.1
3.40.50.10490.8.1.1.1
3.40.50.10490.8.1.1.1.1

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Segment boundaries for domain 2yvaA00

Chopping figure for domain 2yvaA00
DomainStart PDB ResidueStop PDB Residue
2yvaA00 1 193

Structural Neighbourhood (7 entries)

There are 7 matching structural neighberhood comparisons for CATH ID 3.40.50.10490.8.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 7 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1m3sB00 84.99 Bacillus subtilis3-hexulose-6-phosphate isomerasePentose and glucuronate interconversions6-phospho-3-hexuloisomerase [EC:5.3.1.27]Methane metabolism 3.40.50.10490 177 14 79 2.84 3.56
3cvjC00 82.75 UPF0309 protein BH3325Bacillus halodurans 3.40.50.10490 234 12 76 3.78 4.97
1nriA00 81.92 Amino sugar and nucleotide sugar metabolismN-acetylmuramic acid 6-phosphate etheraseHaemophilus influenzaeN-acetylmuramic acid 6-phosphate etherase [EC:4.2.-.-] 3.40.50.10490 240 14 75 3.31 4.36
1moqA02 80.90 Amino sugar and nucleotide sugar metabolismMetabolic pathwaysAlanine, aspartate and glutamate metabolismGlucosamine--fructose-6-phosphate aminotransferase (isomerizing) [EC:2.6.1.16]UDP-N-acetylglucosamine biosynthetic process 3.40.50.10490 148 11 75 2.65 3.53
1j5xA01 80.42 Thermotoga maritimaPutative uncharacterized protein 3.40.50.10490 155 14 77 3.43 4.41
3i0zA02 79.26 Sugar isomerase domain protein AgaSTagatose-6-phosphate ketose/aldose isomerase [EC:5.-.-.-]Streptococcus pneumoniae 3.40.50.10490 175 10 78 3.11 3.95
1j5xA02 78.07 Thermotoga maritimaPutative uncharacterized protein 3.40.50.10490 146 9 74 3.25 4.39
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Displaying entries 1 to 7 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2yvaA00
MQERIKACFTESIQTQIAAAEALPDAISRAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALN
TDNVVLTAIANDRLHDEVYAKQVRALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVE
IRIPSHRSARIQEMHMLTVNCLCDLIDNTLFPH
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2yvaA00
MQERIKACFTESIQTQIAAAEALPDAISRAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALN
TDNVVLTAIANDRLHDEVYAKQVRALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVE
IRIPSHRSARIQEMHMLTVNCLCDLIDNTLFPHQDD
BLAST against CATH

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Domain History Events (6)

Domain assigned by auto on 27 Jan 2008 02:51

Assigning to "3.40.50.10490" based on similarity with "1x92A00"

Flow stage update by auto on 27 Jan 2008 02:29

No in_process hits for Domain "2yvaA00" ready to be processed

Flow stage update by auto on 27 Jan 2008 02:29

NW result present for Domain "2yvaA00"

Flow stage update by auto on 26 Jan 2008 11:08

All required files are present for Domain "2yvaA00"

Flow stage update by auto on 25 Jan 2008 17:28

Beginning processing for Domain "2yvaA00"

Insertion by auto on 25 Jan 2008 17:12

Final ChopClose added based on similarity with "1x92A"