CATH Domain: 2yrrA02 XML data for domain: 2yrrA02

Molscript image for 2yrrA02
2yrrA02
PDB coordinates for domain 2yrrA02

PDB 2yrr, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.640 Aspartate Aminotransferase; domain 2
3.40.640.10 Type I PLP-dependent aspartate aminotransferase-like (Major domain) Gene3D
3.40.640.10.26
3.40.640.10.26.1
3.40.640.10.26.1.1
3.40.640.10.26.1.1.1
3.40.640.10.26.1.1.1.1

Segment boundaries for domain 2yrrA02

Chopping figure for domain 2yrrA02
DomainStart PDB ResidueStop PDB Residue
2yrrA01 1 11
2yrrA01 253 352
2yrrA02 12 252

Structural Neighbourhood (13 entries)

There are 13 matching structural neighberhood comparisons for CATH ID 3.40.640.10.26.1.1.1.1 (SIMAX score < 5)

Displaying entries 1 to 13 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1m32A02 89.68 2-aminoethylphosphonate--pyruvate transaminaseSalmonella enterica subsp. enterica serovar Typhimurium2-aminoethylphosphonate-pyruvate transaminase [EC:2.6.1.37]Phosphonate and phosphinate metabolismMetabolic pathways 3.40.640.10 237 30 95 1.63 1.70
1p3wA02 84.54 Thiamine metabolismCysteine desulfurase activitySelenocysteine lyase activityCysteine desulfuraseIron-sulfur cluster assembly 3.40.640.10 247 15 91 2.92 3.19
1fc4A01 81.49 Glycine, serine and threonine metabolismMetal ion bindingLigase activity2-amino-3-ketobutyrate coenzyme A ligaseGlycine C-acetyltransferase [EC:2.3.1.29] 3.40.640.10 230 13 87 3.86 4.43
1xi9A02 79.03 Pyrococcus furiosusAminotransferase [EC:2.6.1.-]Alanine aminotransferase 3.40.640.10 242 12 91 3.90 4.27
3dydA02 78.55 Tyrosine metabolismL-tyrosine:2-oxoglutarate aminotransferase activityPhenylalanine metabolismMetabolic pathwaysUbiquinone and other terpenoid-quinone biosynthesis 3.40.640.10 244 12 90 3.90 4.33
1svvA01 78.35 Leishmania major strain FriedlinThreonine aldolase [EC:4.1.2.5]Glycine, serine and threonine metabolismMetabolic pathwaysPutative uncharacterized protein 3.40.640.10 242 12 87 3.56 4.08
1o4sA02 77.95 Tyrosine metabolismThermotoga maritimaArginine and proline metabolismAspartate aminotransferase [EC:2.6.1.1]Metabolic pathways 3.40.640.10 221 13 82 3.72 4.48
1c7nA02 77.92 Treponema denticolaHemolysin 3.40.640.10 225 6 83 3.72 4.44
1gd9A02 77.65 Tyrosine metabolismArginine and proline metabolismAspartate aminotransferase [EC:2.6.1.1]Pyrococcus horikoshiiMetabolic pathways 3.40.640.10 223 13 82 3.81 4.59
1fg7A01 77.46 Tyrosine metabolismHistidine metabolismMetabolic pathwaysPhenylalanine metabolismNovobiocin biosynthesis 3.40.640.10 203 11 79 3.66 4.59
1d2fA02 77.19 Nitrogen metabolismSelenoamino acid metabolismSulfur metabolismMetabolic pathwaysCysteine and methionine metabolism 3.40.640.10 243 12 88 4.14 4.66
3ffhB02 76.63 Tyrosine metabolismListeria innocuaHistidinol-phosphate aminotransferase [EC:2.6.1.9]Histidine metabolismMetabolic pathways 3.40.640.10 208 12 82 3.65 4.44
3ftbA02 76.33 Tyrosine metabolismHistidinol-phosphate aminotransferase [EC:2.6.1.9]Histidine metabolismPhenylalanine metabolismMetabolic pathways 3.40.640.10 222 11 85 3.63 4.23
Displaying entries 1 to 13 (page 1 of 1)


Domain ATOM Sequence

>pdb|2yrrA02
PERVQKALLRPMRGHLDPEVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANLDRGPVLVLVNGAFSQRVAE
MAALHGLDPEVLDFPPGEPVDPEAVARALKRRRYRMVALVHGETSTGVLNPAEAIGALAKEAGALFFLDAVTTLGMLPFS
MRAMGVDYAFTGSQKCLSAPPGLAPIAASLEARKAFTGKRGWYLDLARVAEHWERGGYHHTTPVLLHYALLEALDLVLEE
G    

Domain COMBS Sequence

>pdb|2yrrA02
PERVQKALLRPMRGHLDPEVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANLDRGPVLVLVNGAFSQRVAE
MAALHGLDPEVLDFPPGEPVDPEAVARALKRRRYRMVALVHGETSTGVLNPAEAIGALAKEAGALFFLDAVTTLGMLPFS
MRAMGVDYAFTGSQKCLSAPPGLAPIAASLEARKAFTGKRGWYLDLARVAEHWERGGYHHTTPVLLHYALLEALDLVLEE
G    

Domain History Events (6)

Domain assigned by auto on 19 Apr 2008 17:17

Assigning to "3.40.640.10" based on similarity with "1iugA02"

Flow stage update by auto on 19 Apr 2008 17:05

No in_process hits for Domain "2yrrA02" ready to be processed

Flow stage update by auto on 19 Apr 2008 17:05

NW result present for Domain "2yrrA02"

Flow stage update by auto on 19 Apr 2008 08:07

All required files are present for Domain "2yrrA02"

Flow stage update by auto on 18 Apr 2008 08:15

Beginning processing for Domain "2yrrA02"

Insertion by auto on 18 Apr 2008 08:10

Final ChopClose added based on similarity with "1iugA"