CATH Domain: 2vvgB00 XML data for domain: 2vvgB00

Molscript image for 2vvgB00
2vvgB00
PDB coordinates for domain 2vvgB00

PDB 2vvg, Chain B, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.850 Kinesin
3.40.850.10 Kinesin Gene3D
3.40.850.10.2
3.40.850.10.2.2
3.40.850.10.2.2.1
3.40.850.10.2.2.1.1
3.40.850.10.2.2.1.1.1

[top]
Segment boundaries for domain 2vvgB00

Chopping figure for domain 2vvgB00
DomainStart PDB ResidueStop PDB Residue
2vvgB00 4 350

Structural Neighbourhood (5 entries)

There are 5 matching structural neighberhood comparisons for CATH ID 3.40.850.10.2.2.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 5 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1ry6A00 87.58 Plasmodium falciparum 3D7Kinesin-like protein, putative 3.40.850.10 319 33 90 2.47 2.72
2nr8A00 86.78 3.40.850.10 304 36 86 2.59 2.98
3bfnA01 85.78 KinetochoreNucleusMitosisProtein bindingKinesin family member 22 3.40.850.10 272 37 80 2.32 2.88
3dc4A00 84.64 Distributive segregationDrosophila melanogasterMitotic spindle organizationEstablishment of meiotic spindle orientationKinesin-like protein Nod 3.40.850.10 291 31 82 2.61 3.17
2kinA00 82.76 Rattus norvegicusKinesin heavy chain isoform 5CProtein binding 3.40.850.10 238 39 70 2.24 3.19
[1]
Displaying entries 1 to 5 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|2vvgB00
DNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEPRTFTFDAVYDQTSCNYGIFQASFKPLIDAVLEGFNSTIF
AYGQTGAGKTWTMGGNKEEPGAIPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIKNNTKLPLKEDKTRGIYVD
GLSMHRVTTAAELSALMDKGFANRHSSRSHSIFMVRIECSEVIENKEVIRVGKLNLVDLAGSERQKINLSLSALGLVISK
LVEGATHIPYRDSKLTRLLQDSLGGNSKTLMCANISPASTNYDETMSTLRYADRAKQIKNKPRINEDPKDAQI
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|2vvgB00
MSSDNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVYDQTSCNYGIFQASFKP
LIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIKNNTK
LPLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKEVIRVGKLNLV
DLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGATHIPYRDSKLTRLLQDSLGGNSKTLMCANISPASTNYD
ETMSTLRYADRAKQIKNKPRINEDPKDAQI
BLAST against CATH

[top]
Domain History Events (8)

Domain assigned by auto on 21 Oct 2008 17:26

Assigning to "3.40.850.10" based on similarity with "2vvgA00"

Flow stage update by auto on 21 Oct 2008 17:25

No in_process hits for Domain "2vvgB00" ready to be processed

Update comment by auto on 21 Oct 2008 14:24

Domain "2vvgB00" hits Domain "2vvgA00" (100% over 100%) which is currently in process

Flow stage update by auto on 21 Oct 2008 14:07

Domain "2vvgB00" hits Domain "2vvgA00" (100% over 100%) which is currently in process

Flow stage update by auto on 21 Oct 2008 14:07

NW result present for Domain "2vvgB00"

Flow stage update by auto on 21 Oct 2008 08:34

All required files are present for Domain "2vvgB00"

Flow stage update by auto on 20 Oct 2008 18:49

Beginning processing for Domain "2vvgB00"

Insertion by auto on 20 Oct 2008 17:17

Final ChopClose added based on similarity with "2vvgA"