CATH Domain: 2vqeT00 XML data for domain: 2vqeT00

Molscript image for 2vqeT00
2vqeT00
PDB coordinates for domain 2vqeT00

PDB 2vqe, Chain T, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.20 Up-down Bundle
1.20.58 Methane Monooxygenase Hydroxylase; Chain G, domain 1
1.20.58.110 Gene3D
1.20.58.110.1
1.20.58.110.1.1
1.20.58.110.1.1.1
1.20.58.110.1.1.1.1
1.20.58.110.1.1.1.1.1

[top]
Segment boundaries for domain 2vqeT00

Chopping figure for domain 2vqeT00
DomainStart PDB ResidueStop PDB Residue
2vqeT00 8 106

Structural Neighbourhood (5 entries)

There are 5 matching structural neighberhood comparisons for CATH ID 1.20.58.110.1.1.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 5 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1sumB01 81.53 Thermotoga maritimaPhosphate transport system proteinPhosphate transport system protein phoU homolog 2 1.20.58.220 107 6 77 3.16 4.07
2rklB00 79.71 Multivesicular bodyVacuolar protein sorting-associated protein VTA1Membrane fractionProtein bindingEndocytosis 1.20.5.420 50 20 50 1.30 2.57
1r6tA01 78.80 Soluble fractionTryptophanyl-tRNA synthetase, cytoplasmicProtein bindingAminoacyl-tRNA biosynthesisCytoplasm 1.10.287.10 52 11 51 1.96 3.80
1e52A00 75.97 Nucleotide excision repairUvrABC system protein BExcinuclease ABC subunit BEscherichia coli K-12 4.10.860.10 56 23 56 2.78 4.91
2nr4A02 74.82 Hypothetical proteinMethanosarcina mazeiConserved protein 1.20.58.290 58 15 58 2.52 4.30
[1]
Displaying entries 1 to 5 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|2vqeT00
RNLSALKRHRQSLKRRLRNKAKKSAIKTLSKKAVQLAQEGKAEEALKIMRKAESLIDKAAKGSTLHKNAAARRKSRLMRK
VRQLLEAAGAPLIGGGLSA
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|2vqeT00
MAQKKPKRNLSALKRHRQSLKRRLRNKAKKSAIKTLSKKAVQLAQEGKAEEALKIMRKAESLIDKAAKGSTLHKNAAARR
KSRLMRKVRQLLEAAGAPLIGGGLSA
BLAST against CATH

[top]
Domain History Events (6)

Domain assigned by auto on 03 May 2008 17:20

Assigning to "1.20.58.110" based on similarity with "1fjfT00"

Flow stage update by auto on 03 May 2008 17:06

No in_process hits for Domain "2vqeT00" ready to be processed

Flow stage update by auto on 03 May 2008 17:06

NW result present for Domain "2vqeT00"

Flow stage update by auto on 03 May 2008 08:28

All required files are present for Domain "2vqeT00"

Flow stage update by auto on 02 May 2008 14:06

Beginning processing for Domain "2vqeT00"

Insertion by auto on 02 May 2008 14:06

Final ChopClose added based on similarity with "1fjfT"