CATH Domain: 2vozB01 XML data for domain: 2vozB01

Molscript image for 2vozB01
2vozB01
PDB coordinates for domain 2vozB01

PDB 2voz, Chain B, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.190 D-Maltodextrin-Binding Protein; domain 2
3.40.190.10 Periplasmic binding protein-like II Gene3D
3.40.190.10.9
3.40.190.10.9.2
3.40.190.10.9.2.1
3.40.190.10.9.2.1.1
3.40.190.10.9.2.1.1.1

Segment boundaries for domain 2vozB01

Chopping figure for domain 2vozB01
DomainStart PDB ResidueStop PDB Residue
2vozB01 32 129
2vozB01 263 309
2vozB02 130 262
2vozB02 310 346

Structural Neighbourhood (23 entries)

There are 23 matching structural neighberhood comparisons for CATH ID 3.40.190.10.9.2.1.1.1 (SIMAX score < 5)

Displaying entries 1 to 23 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1xvxA01 89.22 Yersinia enterocolitica (type O:8)YfuA 3.40.190.10 155 29 94 1.80 1.91
1atgA01 87.61 Azotobacter vinelandiiBinding protein 3.40.190.10 122 19 81 1.58 1.95
3gzgA01 86.85 Molybdate transport system substrate-binding proteinMolybdate-binding periplasmic protein; permeaseABC transportersXanthomonas axonopodis pv. citri 3.40.190.10 120 20 79 1.54 1.93
1sbpA01 85.34 ABC transportersSalmonella enterica subsp. enterica serovar TyphimuriumSulfate-binding proteinSulfate transport system substrate-binding protein 3.40.190.10 151 12 82 2.01 2.43
1potA01 84.76 ABC transportersOuter membrane-bounded periplasmic spacePolyamine transportPolyamine-transporting ATPase activitySpermidine/putrescine transport system substrate-binding protein 3.40.190.10 166 15 86 2.63 3.03
3c9hA01 84.41 Agrobacterium tumefaciens str. C58ABC transporter, substrate binding protein (Iron)Iron(III) transport system substrate-binding proteinABC transporters 3.40.190.10 189 17 76 1.66 2.18
2onsA01 83.97 Putative sulfate transport system substrate-binding proteinMolybdate/tungstate-binding protein wtpAArchaeoglobus fulgidusABC transporters 3.40.190.10 143 19 83 3.66 4.37
1eu8A01 83.35 Pyrococcus furiosusMultiple sugar transport system substrate-binding proteinTrehalose/maltose binding protein 3.40.190.10 190 22 76 1.90 2.49
3cvgA01 83.23 3.40.190.10 144 15 81 2.49 3.05
1eljA01 82.53 Pyrococcus furiosusMaltooligosaccharide transport system substrate-binding proteinABC transportersMaltotriose-binding protein 3.40.190.10 182 18 79 2.07 2.62
1anfA01 81.95 Bacterial chemotaxisABC transportersMaltose/maltodextrin transport system substrate-binding proteinMaltose-binding periplasmic proteinDisaccharide binding 3.40.190.10 179 20 80 2.39 2.97
1twyA01 81.21 Two-component systemABC transportersVibrio choleraePhosphate transport system substrate-binding proteinABC transporter, periplasmic substrate-binding protein 3.40.190.10 112 20 73 2.78 3.77
1ursB01 81.12 Maltose binding proteinAlicyclobacillus acidocaldarius subsp. acidocaldarius 3.40.190.10 186 14 77 2.28 2.94
1pc3A01 80.21 Two-component systemABC transportersPhosphate-binding protein pstS 1Phosphate transport system substrate-binding proteinMycobacterium tuberculosis 3.40.190.10 141 9 82 3.73 4.52
1xs5A01 79.69 ABC transportersTreponema pallidumMembrane lipoprotein TpN32D-methionine transport system substrate-binding protein 3.40.190.10 134 4 79 3.36 4.21
3thiA01 79.21 Paenibacillus thiaminolyticusThiaminase-1 3.40.190.10 175 13 80 2.45 3.06
2ql3A01 77.84 Rhodococcus jostii RHA1Probable transcriptional regulator, LysR family protein 3.40.190.10 97 12 62 2.55 4.10
1i6aA01 77.57 LysR family transcriptional regulator, hydrogen peroxide-inducible genes activatorEscherichia coli K-12Hydrogen peroxide-inducible genes activator 3.40.190.10 108 12 68 2.63 3.85
3fzvD02 76.71 Probable transcriptional regulatorPseudomonas aeruginosa 3.40.190.10 109 12 64 2.66 4.10
1lstA01 75.11 ABC transportersLysine-arginine-ornithine-binding periplasmic proteinSalmonella enterica subsp. enterica serovar TyphimuriumLysine/arginine/ornithine transport system substrate-binding protein 3.40.190.10 137 8 78 3.64 4.64
2esnA02 74.22 Probable transcriptional regulatorPseudomonas aeruginosa 3.40.190.10 111 8 66 3.25 4.91
2pyyB01 74.09 Nostoc punctiforme PCC 73102Ionotropic glutamate receptor bacterial homologue 3.40.190.10 125 10 71 3.40 4.75
2pvuA01 73.99 Geobacillus stearothermophilusArtJ 3.40.190.10 122 9 72 3.54 4.90
Displaying entries 1 to 23 (page 1 of 1)


Domain ATOM Sequence

>pdb|2vozB01
QSRTINLYSSRHYNTDDALYDAFGEVNLIEASAEELIERIQSEGANSPGDILFTVDAGMLWRAEQAGLFQPVRSGKLNER
IPENLRHPDGLWYGFTQRVSGAGVLKNAPNRDAAIAFLEYLASDDAQRYFAEGNNEYPVIPGVPI    

Domain COMBS Sequence

>pdb|2vozB01
QSRTINLYSSRHYNTDDALYDAFGEVNLIEASAEELIERIQSEGANSPGDILFTVDAGMLWRAEQAGLFQPVRSGKLNER
IPENLRHPDGLWYGFTQRVSGAGVLKNAPNRDAAIAFLEYLASDDAQRYFAEGNNEYPVIPGVPI    

Domain History Events (8)

Domain assigned by auto on 29 Mar 2008 17:30

Assigning to "3.40.190.10" based on similarity with "2vozA01"

Flow stage update by auto on 29 Mar 2008 17:29

No in_process hits for Domain "2vozB01" ready to be processed

Update comment by auto on 29 Mar 2008 17:23

Domain "2vozB01" hits Domain "2vozA01" (100% over 98.6206896551724%) which is currently in process

Flow stage update by auto on 29 Mar 2008 17:08

Domain "2vozB01" hits Domain "2vozA01" (100% over 98.6206896551724%) which is currently in process

Flow stage update by auto on 29 Mar 2008 17:08

NW result present for Domain "2vozB01"

Flow stage update by auto on 29 Mar 2008 11:05

All required files are present for Domain "2vozB01"

Flow stage update by auto on 28 Mar 2008 15:05

Beginning processing for Domain "2vozB01"

Insertion by auto on 28 Mar 2008 14:06

Final ChopClose added based on similarity with "2vozA"