CATH Domain: 2vooB02 XML data for domain: 2vooB02

Molscript image for 2vooB02
2vooB02
PDB coordinates for domain 2vooB02

PDB 2voo, Chain B, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.70 Alpha-Beta Plaits
3.30.70.330 Gene3D
3.30.70.330.6
3.30.70.330.6.1
3.30.70.330.6.1.1
3.30.70.330.6.1.1.1
3.30.70.330.6.1.1.1.2

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Segment boundaries for domain 2vooB02

Chopping figure for domain 2vooB02
DomainStart PDB ResidueStop PDB Residue
2vooB01 9 90
2vooB02 100 185

Structural Neighbourhood (31 entries)

There are 31 matching structural neighberhood comparisons for CATH ID 3.30.70.330.6.1.1.1.2 (SIMAX score < 5)

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Displaying entries 1 to 31 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1rk8A00 88.31 SpliceosomeRNA-binding protein 8AMicrotubule cytoskeleton organizationNucleusDrosophila melanogaster 3.30.70.330 87 16 94 3.01 3.19
1h2vZ00 88.18 SpliceosomeMRNA cappingMRNA cap binding complexNuclear-transcribed mRNA catabolic process, nonsense-mediated decayNuclear cap-binding protein subunit 2 3.30.70.330 92 17 92 3.53 3.82
1x5oA01 87.98 RNA processingHomo sapiensProtein bindingRNA-binding motif, single-stranded-interacting protein 1 3.30.70.330 86 19 86 1.58 1.83
1cvjA01 87.82 Poly(A) RNA bindingTranslation activator activityProtein C-terminus bindingMRNA polyadenylationPolyadenylate-binding protein 1 3.30.70.330 77 20 84 1.81 2.15
1fxlA02 87.71 AU-rich element bindingELAV like protein 2/3/4MRNA processingHomo sapiensELAV-like protein 4 3.30.70.330 77 18 82 1.72 2.10
2do0A01 87.24 Protein domain specific bindingIntegral to plasma membraneParaspecklesAlternative nuclear mRNA splicing, via spliceosomeHeterogeneous nuclear ribonucleoprotein M 3.30.70.330 76 14 84 1.70 2.02
1x5uA01 87.11 SpliceosomeSpliceosomal complexHomo sapiensSplicing factor 3B subunit 4Splicing factor 3B subunit 4 3.30.70.330 80 20 87 1.92 2.19
2qfjA02 87.08 Homo sapiensPoly(U)-binding-splicing factor PUF60Protein binding 3.30.70.330 87 17 87 2.20 2.51
1cvjG02 86.79 Poly(A) RNA bindingProtein C-terminus bindingTranslation activator activityMRNA polyadenylationPolyadenylate-binding protein 1 3.30.70.330 88 15 97 2.73 2.79
2dgsA01 86.03 CytoplasmDAZ-associated protein 1NucleusRNA bindingHomo sapiens 3.30.70.330 89 14 98 3.93 3.97
1nu4A00 85.90 U1 small nuclear ribonucleoprotein ASpliceosomeSpliceosomal complexHomo sapiensProtein binding 3.30.70.330 91 19 86 3.13 3.61
1d8zA00 85.65 Mus musculusAU-rich element bindingELAV like protein 2/3/4ELAV-like protein 3 3.30.70.330 89 15 92 2.97 3.22
2jwnA01 85.30 CytoplasmPoly(A) RNA bindingXenopus laevisEmbryonic polyadenylate-binding protein 2-B 3.30.70.330 100 19 86 2.74 3.19
1fjeB02 84.73 NucleolinMesocricetus auratus 3.30.70.330 84 21 92 2.77 3.01
1sjqA00 84.55 Polypyrimidine tract-binding protein 1Poly-pyrimidine tract bindingHeterogeneous nuclear ribonucleoprotein complexNucleolusMRNA processing 3.30.70.330 88 19 87 3.68 4.20
2pehA01 84.46 Splicing factor 45SpliceosomeHomo sapiensProtein bindingSplicing factor 45 3.30.70.330 83 19 86 3.68 4.25
1uw4A00 84.43 Regulator of nonsense transcripts 3BNuclear-transcribed mRNA catabolic process, nonsense-mediated decayHomo sapiensProtein binding 3.30.70.330 90 12 87 3.63 4.14
2u2fA00 84.32 Splicing factor U2AF 65 kDa subunitSpliceosomeSpliceosomal complexSplicing factor U2AF 65 kDa subunitEnzyme binding 3.30.70.330 85 17 88 3.11 3.50
1fxlA01 84.30 AU-rich element bindingELAV like protein 2/3/4MRNA processingHomo sapiensELAV-like protein 4 3.30.70.330 71 15 77 2.08 2.68
1no8A00 83.81 THO complex subunit 4Mus musculusSpliceosomeSingle-stranded DNA bindingRNA binding 3.30.70.330 78 14 86 2.81 3.25
1jmtA00 83.25 Spliceosomal complexSplicing factor U2AF 35 kDa subunitCajal bodyHomo sapiensProtein binding 3.30.70.330 98 12 78 2.27 2.89
2errA01 82.83 Fox-1 homolog AProtein C-terminus bindingHomo sapiensTrans-Golgi network 3.30.70.330 83 14 89 3.24 3.60
1whvA00 81.76 Mus musculusPoly(A)-specific ribonuclease PARN 3.30.70.330 100 14 77 3.72 4.83
1fjeB01 81.58 NucleolinMesocricetus auratus 3.30.70.330 81 13 85 2.77 3.24
1sjrA00 81.38 Polypyrimidine tract-binding protein 1Poly-pyrimidine tract bindingHeterogeneous nuclear ribonucleoprotein complexNucleolusMRNA processing 3.30.70.330 108 16 74 3.53 4.77
3sxlA02 81.13 Sex differentiationDrosophila melanogasterProtein complexPoly-pyrimidine tract bindingImaginal disc growth 3.30.70.330 55 18 60 1.40 2.31
1cvjH02 78.23 Poly(A) RNA bindingProtein C-terminus bindingMRNA polyadenylationTranslation activator activityPolyadenylate-binding protein 1 3.30.70.330 52 21 58 2.78 4.76
1qm9A01 77.49 Polypyrimidine tract-binding protein 1Poly-pyrimidine tract bindingHeterogeneous nuclear ribonucleoprotein complexNucleolusMRNA processing 3.30.70.330 98 11 78 3.33 4.24
1in0A01 77.45 Hypothetical proteinHaemophilus influenzaeUPF0234 protein HI_1034 3.30.70.860 70 11 77 3.38 4.36
1yx2A02 76.41 Nitrogen metabolismAminomethyltransferase [EC:2.1.2.10]One carbon pool by folateBacillus subtilisGlycine, serine and threonine metabolism 3.30.70.1400 81 11 68 3.01 4.39
2hiyB01 75.92 Streptococcus pneumoniaePutative uncharacterized protein 3.30.70.1280 87 9 76 3.15 4.12
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Displaying entries 1 to 31 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2vooB02
VTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETD
LLILFK
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2vooB02
VTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETD
LLILFKDDYFAKKNE
BLAST against CATH

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Domain History Events (11)

Domain assigned by auto on 13 May 2008 14:41

Assigning to "3.30.70.330" based on similarity with "2vodA02"

Flow stage update by auto on 13 May 2008 14:41

No in_process hits for Domain "2vooB02" ready to be processed

Update comment by auto on 13 May 2008 14:38

Domain "2vooB02" hits Domain "2vopA02" (100% over 100%) which is currently in process

Update comment by auto on 13 May 2008 14:35

Domain "2vooB02" hits Domain "2vooA02" (100% over 100%) which is currently in process

Update comment by auto on 13 May 2008 14:32

Domain "2vooB02" hits Domain "2vodB02" (100% over 100%) which is currently in process

Update comment by auto on 13 May 2008 14:27

Domain "2vooB02" hits Domain "2vodA02" (100% over 100%) which is currently in process

Flow stage update by auto on 13 May 2008 14:10

Domain "2vooB02" hits Domain "2vodA02" (100% over 100%) which is currently in process

Flow stage update by auto on 13 May 2008 14:10

NW result present for Domain "2vooB02"

Flow stage update by auto on 13 May 2008 08:16

All required files are present for Domain "2vooB02"

Flow stage update by auto on 12 May 2008 12:29

Beginning processing for Domain "2vooB02"

Insertion by auto on 12 May 2008 11:13

Final ChopClose added based on similarity with "2vodA"