CATH Domain: 2voaA00 XML data for domain: 2voaA00

Molscript image for 2voaA00
2voaA00
PDB coordinates for domain 2voaA00

PDB 2voa, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.60 4-Layer Sandwich
3.60.10 Deoxyribonuclease I; Chain A
3.60.10.10 Gene3D
3.60.10.10.3
3.60.10.10.3.1
3.60.10.10.3.1.1
3.60.10.10.3.1.1.1
3.60.10.10.3.1.1.1.1

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Segment boundaries for domain 2voaA00

Chopping figure for domain 2voaA00
DomainStart PDB ResidueStop PDB Residue
2voaA00 1 257

Structural Neighbourhood (5 entries)

There are 5 matching structural neighberhood comparisons for CATH ID 3.60.10.10.3.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 5 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1hd7A00 87.73 Metal ion bindingUracil DNA N-glycosylase activityDNA-(apurinic or apyrimidinic site) lyaseAP endonuclease 1 [EC:4.2.99.18]Perinuclear region of cytoplasm 3.60.10.10 259 29 91 1.73 1.89
1vybA00 83.97 Homo sapiensPutative uncharacterized protein 3.60.10.10 236 20 85 2.33 2.71
1wduB00 80.06 Bombyx moriORF2 3.60.10.10 219 15 80 2.54 3.17
2a40B00 79.99 Bos taurusDeoxyribonuclease-1 [EC:3.1.21.1]Deoxyribonuclease-1 3.60.10.10 255 12 83 3.08 3.70
2f1nA00 78.85 Escherichia coliCytolethal distending toxin subunit B 3.60.10.10 252 13 79 3.19 4.02
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Displaying entries 1 to 5 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2voaA00
MLKIATFNVNSIRSRLHIVIPWLKENKPDILCMQETKVENRKFPEADFHRIGYHVVFSGSKGRNGVAIASLEEPEDVSFG
LDSEPKDEDRLIRAKIAGIDVINTYVPQGFKIDSEKYQYKLQWLERLYHYLQKTVDFRSFAVWCGDMNVAPEPIDVHSPD
KLKNHVFHEDARRAYKKILELGFVDVLRKIHPNERIYTFYDYRVKGAIERGLGWRGDAILATPPLAERCVDCYADIKPRL
AEKPSDHLPLVAVFDV
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2voaA00
MLKIATFNVNSIRSRLHIVIPWLKENKPDILCMQETKVENRKFPEADFHRIGYHVVFSGSKGRNGVAIASLEEPEDVSFG
LDSEPKDEDRLIRAKIAGIDVINTYVPQGFKIDSEKYQYKLQWLERLYHYLQKTVDFRSFAVWCGDMNVAPEPIDVHSPD
KLKNHVXFHEDARRAYKKILELGFVDVLRKIHPNERIYTFYDYRVKGAIERGLGWRGDAILATPPLAERCVDCYADIKPR
LAEKPSDHLPLVAVFDV
BLAST against CATH

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Domain History Events (8)

Domain assigned by auto on 17 Dec 2008 08:46

Assigning to "3.60.10.10" based on similarity with "2voaB00"

Flow stage update by auto on 17 Dec 2008 08:45

No in_process hits for Domain "2voaA00" ready to be processed

Update comment by auto on 17 Dec 2008 08:34

Domain "2voaA00" hits Domain "2voaB00" (99.6108949416342% over 100%) which is currently in process

Flow stage update by auto on 17 Dec 2008 08:16

Domain "2voaA00" hits Domain "2voaB00" (99.6108949416342% over 100%) which is currently in process

Flow stage update by auto on 17 Dec 2008 08:16

NW result present for Domain "2voaA00"

Flow stage update by auto on 16 Dec 2008 14:19

All required files are present for Domain "2voaA00"

Flow stage update by auto on 15 Dec 2008 20:17

Beginning processing for Domain "2voaA00"

Insertion by auto on 15 Dec 2008 20:07

Final ChopClose added based on similarity with "2jc4A"