CATH Domain: 2vkeA01 XML data for domain: 2vkeA01

Molscript image for 2vkeA01
2vkeA01
PDB coordinates for domain 2vkeA01

PDB 2vke, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.10 Arc Repressor Mutant, subunit A
1.10.10.60 Homeodomain-like Gene3D
1.10.10.60.1
1.10.10.60.1.1
1.10.10.60.1.1.2
1.10.10.60.1.1.2.1
1.10.10.60.1.1.2.1.1

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Segment boundaries for domain 2vkeA01

Chopping figure for domain 2vkeA01
DomainStart PDB ResidueStop PDB Residue
2vkeA01 2 66
2vkeA02 67 207

Structural Neighbourhood (38 entries)

There are 38 matching structural neighberhood comparisons for CATH ID 1.10.10.60.1.1.2.1.1 (SIMAX score < 5)

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Displaying entries 1 to 38 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2hxoA01 91.97 Streptomyces coelicolorPutative TetR-family transcriptional regulator 1.10.10.60 63 31 96 1.33 1.37
3bqyA01 89.98 Putative transcriptional regulatorStreptomyces coelicolor 1.10.10.60 48 41 78 1.24 1.58
2np3B01 89.02 Streptomyces coelicolorPutative TetR-family regulator 1.10.10.60 60 16 83 1.44 1.72
2i10A01 88.11 Rhodococcus jostii RHA1Transcriptional regulator, TetR family protein 1.10.10.60 58 24 93 4.66 4.99
3c2bA01 87.87 Agrobacterium tumefaciens str. C58Transcriptional regulator, TetR family 1.10.10.60 51 31 78 1.38 1.75
3bqzA01 87.05 HTH-type transcriptional regulator qacRStaphylococcus aureus subsp. aureus Mu50 1.10.10.60 49 28 77 1.39 1.80
1t33A01 86.86 Putative transcriptional repressor (TetR/AcrR family)Salmonella enterica subsp. enterica serovar Typhimurium 1.10.10.60 62 22 79 1.69 2.14
2hxiA01 86.56 Putative transcriptional regulatorStreptomyces coelicolor 1.10.10.60 63 34 95 3.27 3.43
1zk8A01 86.49 Transcriptional regulator, TetR familyBacillus cereus ATCC 14579 1.10.10.60 46 36 68 1.27 1.84
3f0cA01 86.39 Cytophaga hutchinsonii ATCC 33406Transcriptional regulator 1.10.10.60 47 23 72 1.19 1.65
2fq4A01 85.83 Transcriptional regulator, TetR familyBacillus cereus ATCC 14579 1.10.10.60 47 23 68 1.45 2.11
1zkgA01 85.46 Thermotoga maritimaTranscriptional regulator, TetR family 1.10.10.60 46 23 68 1.51 2.19
1t56A01 85.15 TRANSCRIPTIONAL REGULATORY REPRESSOR PROTEIN (TETR-FAMILY) ETHRMycobacterium tuberculosis 1.10.10.60 46 17 68 1.31 1.90
2ibdA01 85.13 Rhodococcus jostii RHA1Possible transcriptional regulator 1.10.10.60 45 24 65 1.07 1.63
2raeA01 85.07 Rhodococcus jostii RHA1Transcriptional regulator, AcrR family protein 1.10.10.60 43 18 67 1.15 1.71
2id3A01 84.78 Putative transcriptional regulatorStreptomyces coelicolor 1.10.10.60 47 19 67 1.56 2.32
1rktA01 84.74 Bacillus subtilisUncharacterized HTH-type transcriptional regulator yfiR 1.10.10.60 52 11 65 1.38 2.10
2id6A01 84.41 Thermotoga maritimaTranscriptional regulator, TetR family 1.10.10.60 46 26 68 1.65 2.40
2hyjA01 84.17 Streptomyces coelicolorPutative tetR-family transcriptional regulator 1.10.10.60 46 21 65 1.17 1.78
3ccyA01 84.08 Bordetella parapertussisPutative TetR-family transcriptional regulator 1.10.10.60 44 13 65 1.15 1.75
2fd5A01 83.22 Probable transcriptional regulatorPseudomonas aeruginosa 1.10.10.60 48 12 65 1.50 2.29
1ojlA03 79.94 Two-component systemTwo-component system, NtrC family, response regulator HydGTranscriptional regulatory protein zraRSalmonella enterica subsp. enterica serovar Typhimurium 1.10.10.60 47 14 57 2.77 4.83
1jusD01 79.87 HTH-type transcriptional regulator qacRStaphylococcus aureus 1.10.10.60 49 12 62 2.00 3.21
1u8bA02 79.85 Regulatory protein adaZinc ion bindingAraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]Escherichia coli K-12 1.10.10.60 59 16 81 3.97 4.84
1gvdA00 79.08 Transcriptional activator MybNucleusEmbryonic digestive tract developmentProtein bindingMus musculus 1.10.10.60 52 11 73 3.64 4.93
1ng6A02 79.00 Hypothetical proteinBacillus subtilisUncharacterized protein yqeY 1.10.10.410 57 10 75 3.39 4.50
1gv2A02 78.40 Transcriptional activator MybNucleusEmbryonic digestive tract developmentProtein bindingMus musculus 1.10.10.60 46 8 70 2.78 3.94
2k9nA02 78.11 MYB24Trichomonas vaginalis 1.10.10.60 54 12 81 3.67 4.48
1bl0A01 78.04 Multiple antibiotic resistance protein marAAraC family transcriptional regulator, multiple antibiotic resistance protein MarAEscherichia coli K-12 1.10.10.60 56 8 81 3.91 4.77
2dmqA01 77.76 LIM/homeobox protein Lhx9Homo sapiens 1.10.10.60 57 10 88 3.56 4.02
1nk3P00 77.11 Ectoderm developmentTranscription factor bindingHomeobox protein vndBrain developmentDrosophila melanogaster 1.10.10.60 63 0 77 3.68 4.73
1iv6A00 76.86 Positive regulation of mitotic cell cycleProtein homooligomerizationNegative regulation of telomerase activityTelomere maintenance via telomere shorteningG2/M transition of mitotic cell cycle 1.10.10.60 57 7 83 4.07 4.87
1fjlC00 76.71 Transcription activator activitySequence-specific DNA bindingSegmentation protein pairedDrosophila melanogasterPositive regulation of transcription, DNA-dependent 1.10.10.60 59 8 80 3.78 4.71
1b72A00 76.28 Homeobox protein Hox-B1Protein domain specific bindingHomeobox protein HoxA/B/D1Homo sapiens 1.10.10.60 68 6 77 3.83 4.91
1fexA00 74.19 Protein bindingTelomeric repeat-binding factor 2-interacting protein 1Protection from non-homologous end joining at telomereNegative regulation of telomere maintenanceCytoplasm 1.10.10.60 59 10 73 3.54 4.80
2yveB00 73.48 Corynebacterium glutamicumBacterial regulatory protein, TetR family 1.10.357.10 172 21 35 1.69 4.77
3cjdA00 71.76 Jannaschia sp. CCS1Transcriptional regulator, TetR family 1.10.357.10 175 21 34 1.26 3.67
2g7sA00 69.18 Agrobacterium tumefaciens str. C58Transcriptional regulator, TetR family 1.10.357.10 187 14 32 1.60 4.90
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Displaying entries 1 to 38 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2vkeA01
SRLNRESVIDAALELLNETGIDGLTTRKLAQKLGIEQPTLYWHVKNKRALLDALAVEILARHHDY
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2vkeA01
SRLNRESVIDAALELLNETGIDGLTTRKLAQKLGIEQPTLYWHVKNKRALLDALAVEILARHHDY
BLAST against CATH

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Domain History Events (6)

Domain assigned by auto on 27 Jul 2008 23:32

Assigning to "1.10.10.60" based on similarity with "1bj0A01"

Flow stage update by auto on 27 Jul 2008 23:14

No in_process hits for Domain "2vkeA01" ready to be processed

Flow stage update by auto on 27 Jul 2008 23:14

NW result present for Domain "2vkeA01"

Flow stage update by auto on 26 Jul 2008 11:49

All required files are present for Domain "2vkeA01"

Flow stage update by auto on 25 Jul 2008 19:45

Beginning processing for Domain "2vkeA01"

Insertion by auto on 25 Jul 2008 17:37

Final ChopClose added based on similarity with "1bj0A"