CATH Domain: 2vigA01 XML data for domain: 2vigA01

Molscript image for 2vigA01
2vigA01
PDB coordinates for domain 2vigA01

PDB 2vig, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.540 Butyryl-Coa Dehydrogenase, subunit A; domain 1
1.10.540.10 Butyryl-Coa Dehydrogenase, subunit A, domain 1 Gene3D
1.10.540.10.4
1.10.540.10.4.1
1.10.540.10.4.1.1
1.10.540.10.4.1.1.1
1.10.540.10.4.1.1.1.1

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Segment boundaries for domain 2vigA01

Chopping figure for domain 2vigA01
DomainStart PDB ResidueStop PDB Residue
2vigA01 34 149
2vigA02 150 267
2vigA03 268 408

Structural Neighbourhood (7 entries)

There are 7 matching structural neighberhood comparisons for CATH ID 1.10.540.10.4.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 7 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1ukwA01 91.75 Geraniol degradationThermus thermophilus HB27[EC:1.3.99.-]Putative acyl-CoA dehydrogenase1- and 2-Methylnaphthalene degradation 1.10.540.10 116 31 96 1.30 1.35
1bucA01 90.81 Acyl-CoA dehydrogenase, short-chain specificMegasphaera elsdenii 1.10.540.10 123 30 94 1.46 1.55
1siqA01 90.15 Fatty acid metabolismGlutaryl-CoA dehydrogenase [EC:1.3.99.7]Glutaryl-CoA dehydrogenase activityHomo sapiensGlutaryl-CoA dehydrogenase, mitochondrial 1.10.540.10 128 26 89 1.20 1.34
1r2jA01 87.58 Streptomyces hygroscopicus subsp. ascomyceticusFkbI 1.10.540.10 103 21 88 1.62 1.82
2rfqB01 83.19 Rhodococcus jostii RHA13-HSA hydroxylase, oxygenase 1.10.540.10 102 18 87 2.51 2.88
2or0B01 83.16 Rhodococcus jostii RHA1Hydroxylase 1.10.540.10 121 8 90 4.33 4.81
2ddhA01 80.18 Fatty acid metabolismPeroxisomeRattus norvegicusPPAR signaling pathwayPalmitoyl-CoA oxidase activity 1.10.540.10 118 7 84 3.63 4.28
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Displaying entries 1 to 7 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2vigA01
LPETHQMLLQTCRDFAEKELFPIAAQVDKEHLFPAAQVKKMGGLGLLAMDVPEELGGAGLDYLAYAIAMEEISRGCASTG
VIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDKI
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2vigA01
MQSVELPETHQMLLQTCRDFAEKELFPIAAQVDKEHLFPAAQVKKMGGLGLLAMDVPEELGGAGLDYLAYAIAMEEISRG
CASTGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDKI
BLAST against CATH

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Domain History Events (6)

Domain assigned by auto on 29 Dec 2007 23:15

Assigning to "1.10.540.10" based on similarity with "1jqiA01"

Flow stage update by auto on 29 Dec 2007 23:03

No in_process hits for Domain "2vigA01" ready to be processed

Flow stage update by auto on 29 Dec 2007 23:03

NW result present for Domain "2vigA01"

Flow stage update by auto on 29 Dec 2007 08:06

All required files are present for Domain "2vigA01"

Flow stage update by auto on 28 Dec 2007 11:49

Beginning processing for Domain "2vigA01"

Insertion by auto on 28 Dec 2007 11:06

Final ChopClose added based on similarity with "1jqiA"