CATH Domain: 2vhlB01 XML data for domain: 2vhlB01

Molscript image for 2vhlB01
2vhlB01
PDB coordinates for domain 2vhlB01

PDB 2vhl, Chain B, Domain 1

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.30 Roll
2.30.40 Urease, subunit C; domain 1
2.30.40.10 Urease, subunit C, domain 1 Gene3D
2.30.40.10.15
2.30.40.10.15.1
2.30.40.10.15.1.1
2.30.40.10.15.1.1.1
2.30.40.10.15.1.1.1.1

[top]
Segment boundaries for domain 2vhlB01

Chopping figure for domain 2vhlB01
DomainStart PDB ResidueStop PDB Residue
2vhlB01 2 57
2vhlB01 359 394
2vhlB02 58 358

Structural Neighbourhood (8 entries)

There are 8 matching structural neighberhood comparisons for CATH ID 2.30.40.10.15.1.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 8 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1gkrA01 88.50 L-hydantoinaseArthrobacter aurescens 2.30.40.10 87 24 93 3.13 3.35
3feqA01 87.53 2.30.40.10 105 17 81 1.77 2.16
2icsA01 87.33 Pyrimidine metabolismDihydroorotase [EC:3.5.2.3]Metabolic pathwaysEnterococcus faecalisPutative uncharacterized protein 2.30.40.10 100 23 81 2.21 2.73
2qs8A01 87.30 2.30.40.10 99 20 85 2.29 2.67
3be7A01 86.34 2.30.40.10 95 26 86 1.94 2.25
1gkrB01 82.69 L-hydantoinaseArthrobacter aurescens 2.30.40.10 130 25 69 3.10 4.48
2oodA01 79.65 Bradyrhizobium japonicumGuanine deaminase [EC:3.5.4.3]Purine metabolismBlr3880 proteinMetabolic pathways 2.30.40.10 135 16 62 2.18 3.46
2imrA01 78.30 Uncharacterized protein DR_0824Deinococcus radiodurans 2.30.40.10 69 13 71 3.14 4.38
[1]
Displaying entries 1 to 8 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|2vhlB01
AESLLIKDIAIVTENEVIKNGYVGINDGKISTVSTERPKEPYSKEIQAPADSVLLPSVTVGKDADLVIVSSDCEVILTIC
RGNIAFISKEAD
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|2vhlB01
MAESLLIKDIAIVTENEVIKNGYVGINDGKISTVSTERPKEPYSKEIQAPADSVLLPSVTVGKDADLVIVSSDCEVILTI
CRGNIAFISKEADQI
BLAST against CATH

[top]
Domain History Events (8)

Domain assigned by auto on 08 Dec 2007 18:13

Assigning to "2.30.40.10" based on similarity with "2vhlA01"

Flow stage update by auto on 08 Dec 2007 18:12

No in_process hits for Domain "2vhlB01" ready to be processed

Update comment by auto on 08 Dec 2007 14:20

Domain "2vhlB01" hits Domain "2vhlA01" (100% over 100%) which is currently in process

Flow stage update by auto on 08 Dec 2007 14:06

Domain "2vhlB01" hits Domain "2vhlA01" (100% over 100%) which is currently in process

Flow stage update by auto on 08 Dec 2007 14:06

NW result present for Domain "2vhlB01"

Flow stage update by auto on 08 Dec 2007 06:12

All required files are present for Domain "2vhlB01"

Flow stage update by auto on 07 Dec 2007 10:17

Beginning processing for Domain "2vhlB01"

Insertion by auto on 07 Dec 2007 10:07

Final ChopClose added based on similarity with "2vhlA"