CATH Domain: 2vd8B01 XML data for domain: 2vd8B01

Molscript image for 2vd8B01
2vd8B01
PDB coordinates for domain 2vd8B01

PDB 2vd8, Chain B, Domain 1

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.37 Lyase, Ornithine Decarboxylase; Chain A, domain 1
2.40.37.10 Lyase, Ornithine Decarboxylase; Chain A, domain 1 Gene3D
2.40.37.10.1
2.40.37.10.1.1
2.40.37.10.1.1.1
2.40.37.10.1.1.1.1
2.40.37.10.1.1.1.1.1

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Segment boundaries for domain 2vd8B01

Chopping figure for domain 2vd8B01
DomainStart PDB ResidueStop PDB Residue
2vd8B01 4 15
2vd8B01 249 389
2vd8B02 16 229

Structural Neighbourhood (3 entries)

There are 3 matching structural neighberhood comparisons for CATH ID 2.40.37.10.1.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 3 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
3co8A01 91.66 D-Alanine metabolismAlanine racemaseOenococcus oeni PSU-1Alanine racemase [EC:5.1.1.1]Metabolic pathways 2.40.37.10 144 32 87 1.34 1.53
1vfsB01 89.98 Alanine racemaseStreptomyces lavendulae subsp. lavendulae 2.40.37.10 147 33 95 2.52 2.65
1rcqA01 87.20 D-Alanine metabolismPseudomonas aeruginosaAlanine racemase, catabolicAlanine racemase [EC:5.1.1.1]Metabolic pathways 2.40.37.10 150 26 84 1.55 1.83
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Displaying entries 1 to 3 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2vd8B01
APFYRDTWVEVDALSLHTVAHIKQVIGDGISYNVTYRTTEEWIATVAIGYADGWLRRLQGFEVLVNGRVPIVGRVTMDQF
MIHLPCEVPLGTVTLIGRQGDEYISATEVAEYSGTINYEIITTISFRVPRIFIRNGVVEVINYLNDI
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2vd8B01
GPMEEAPFYRDTWVEVDALSLHTXVAHIKQVIXGDGISYNVTYRTXTEEWIATVAIGYADGWLRRLQGFEVLVNGXRVPI
VGRVTMDQFMIHLPCEVPLGTXVTLIGRQGDEYISATEVAEYSGTINYEIITTISFRVPRIFIRNGXVVEVINYLNDI
BLAST against CATH

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Domain History Events (8)

Domain assigned by auto on 27 Jul 2008 20:55

Assigning to "2.40.37.10" based on similarity with "2vd8A01"

Flow stage update by auto on 27 Jul 2008 20:53

No in_process hits for Domain "2vd8B01" ready to be processed

Update comment by auto on 27 Jul 2008 20:38

Domain "2vd8B01" hits Domain "2vd8A01" (96.2025316455696% over 100%) which is currently in process

Flow stage update by auto on 27 Jul 2008 20:19

Domain "2vd8B01" hits Domain "2vd8A01" (96.2025316455696% over 100%) which is currently in process

Flow stage update by auto on 27 Jul 2008 20:18

NW result present for Domain "2vd8B01"

Flow stage update by auto on 26 Jul 2008 11:49

All required files are present for Domain "2vd8B01"

Flow stage update by auto on 26 Jul 2008 11:49

Beginning processing for Domain "2vd8B01"

Insertion by auto on 26 Jul 2008 01:11

Final ChopClose added based on similarity with "2vd8A"