CATH Domain: 2vd3A03 XML data for domain: 2vd3A03

Molscript image for 2vd3A03
2vd3A03
PDB coordinates for domain 2vd3A03

PDB 2vd3, Chain A, Domain 3

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.70 Alpha-Beta Plaits
3.30.70.120 Gene3D
3.30.70.120.5
3.30.70.120.5.1
3.30.70.120.5.1.1
3.30.70.120.5.1.1.1
3.30.70.120.5.1.1.1.1

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Segment boundaries for domain 2vd3A03

Chopping figure for domain 2vd3A03
DomainStart PDB ResidueStop PDB Residue
2vd3A01 -1 89
2vd3A01 181 213
2vd3A02 90 180
2vd3A03 214 287

Structural Neighbourhood (50 entries)

There are 50 matching structural neighberhood comparisons for CATH ID 3.30.70.120.5.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 50 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1vi7A02 85.26 IMPACT family member yigZProtein bindingEscherichia coli K-12 3.30.70.240 71 12 89 3.08 3.45
2f1fA01 84.06 Valine, leucine and isoleucine biosynthesisMetabolic pathwaysButanoate metabolismC5-Branched dibasic acid metabolismPantothenate and CoA biosynthesis 3.30.70.260 79 13 84 2.69 3.17
2nzcA00 83.73 Thermotoga maritimaPutative uncharacterized protein 3.30.70.1150 77 12 87 2.82 3.24
2gx8C02 83.73 Bacillus cereus ATCC 14579NIF3-related protein 3.30.70.830 102 13 72 2.42 3.34
1q5yD00 83.54 CopG family transcriptional regulator, nickel-responsive regulatorNickel-responsive regulatorProtein bindingEscherichia coli K-12 3.30.70.1150 80 8 86 2.93 3.40
1darA05 83.19 Thermus thermophilus HB8Elongation factor GElongation factor EF-G [EC:3.6.5.3] 3.30.70.240 87 9 81 3.03 3.71
3e3xA02 82.93 Vibrio parahaemolyticusBipAGTP-binding protein 3.30.70.240 83 4 80 3.11 3.85
1y7pB01 82.85 Archaeoglobus fulgidusUncharacterized protein AF_1403 3.30.70.260 80 10 85 2.64 3.11
1eayD00 82.78 Bacterial chemotaxisTwo-component systemTwo-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]Escherichia coli K-12Chemotaxis protein cheA 3.30.70.400 69 11 82 2.66 3.23
1u8sA02 82.66 Glycine cleavage system transcriptional repressor, putativeGlycine cleavage system transcriptional repressorVibrio cholerae 3.30.70.260 84 12 80 2.79 3.45
1vr6A01 82.41 Phenylalanine, tyrosine and tryptophan biosynthesisMetabolic pathwaysThermotoga maritima3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]Phospho-2-dehydro-3-deoxyheptonate aldolase 3.30.70.1140 75 8 89 4.21 4.71
2qmwA03 82.20 Phenylalanine, tyrosine and tryptophan biosynthesisMetabolic pathwaysPrephenate dehydratase [EC:4.2.1.51]Similar to chorismate mutaseStaphylococcus aureus subsp. aureus Mu50 3.30.70.260 73 9 86 3.18 3.68
1nzaA00 82.03 Thermus thermophilus HB8Divalent-cation tolerance protein cutAPeriplasmic divalent cation tolerance protein 3.30.70.830 103 12 70 2.08 2.93
1earA02 81.34 Sporosarcina pasteuriiUrease accessory protein ureE 3.30.70.790 69 7 81 3.49 4.30
1i1gA02 81.26 Pyrococcus furiosusHTH-type transcriptional regulator lrpALrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA 3.30.70.920 77 13 88 3.33 3.77
2i0xA01 81.25 Pyrococcus furiosusPutative uncharacterized protein 3.30.70.240 66 10 74 2.39 3.22
2ivyA01 80.94 Sulfolobus solfataricusPutative uncharacterized protein 3.30.70.240 74 12 81 3.42 4.22
2qmxA03 80.85 Prephenate dehydratase [EC:4.2.1.51]Phenylalanine, tyrosine and tryptophan biosynthesisChlorobaculum tepidumMetabolic pathwaysPrephenate dehydratase 3.30.70.260 90 14 80 3.24 4.05
1gmuA01 80.63 Klebsiella aerogenesUrease accessory protein ureE 3.30.70.790 67 7 83 4.15 4.95
1kr4A00 80.52 Thermotoga maritimaDivalent-cation tolerance protein cutAPeriplasmic divalent cation tolerance protein 3.30.70.830 107 14 69 2.55 3.69
2nuhA00 80.24 Xylella fastidiosaPeriplasmic divalent cation tolerance proteinPeriplasmic divalent cation tolerance protein 3.30.70.830 104 12 70 2.20 3.13
2w25A02 80.15 Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory proteinLeucine-responsive regulatory proteinMycobacterium tuberculosis 3.30.70.920 81 8 77 2.88 3.70
1utaA00 79.65 Membrane fractionCell cycle cytokinesisCell division protein FtsNCell division protein ftsNProtein binding 3.30.70.1070 77 13 88 4.14 4.69
1xtzA02 79.58 Identical protein bindingNucleusRibose-5-phosphate isomerasePyridoxine biosynthetic processRibose 5-phosphate isomerase A [EC:5.3.1.6] 3.30.70.260 84 12 73 3.01 4.08
2nyiA02 79.30 3.30.70.260 89 10 75 2.97 3.95
1jqgA01 79.16 Carboxypeptidase AHelicoverpa armigera 3.30.70.340 91 9 73 3.06 4.16
1dtjA00 79.08 RNA-binding protein Nova-2Homo sapiens 3.30.1370.10 74 9 82 3.77 4.57
1pytA00 78.88 Bos taurusCarboxypeptidase A1 [EC:3.4.17.1]Carboxypeptidase A1 3.30.70.340 94 9 72 3.53 4.88
2nyiA01 78.61 3.30.70.260 77 6 90 4.06 4.47
1n0uA05 78.60 Positive regulation of translational elongationTranslation elongation factor activityElongation factor 2Elongation factor EF-2 [EC:3.6.5.3]Saccharomyces cerevisiae 3.30.70.240 112 13 60 2.54 4.18
1lfpA03 78.49 UPF0082 protein aq_1575Aquifex aeolicus 3.30.70.980 73 8 83 3.01 3.59
2rhsD06 78.37 Aminoacyl-tRNA biosynthesisStaphylococcus haemolyticus JCSC1435Phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]Phenylalanyl-tRNA synthetase beta chain 3.30.70.380 88 13 71 3.30 4.61
1xmbA02 78.31 Auxin metabolic processArabidopsis thalianaIAA-Ala conjugate hydrolase activityIAA-amino acid hydrolase ILR1-like 2 3.30.70.360 101 4 65 3.19 4.88
1u0sA00 78.19 Thermotoga maritimaBacterial chemotaxisTwo-component systemTwo-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]Protein binding 3.30.70.1110 86 6 74 3.43 4.61
3c19A01 77.86 Methanopyrus kandleriUncharacterized conserved protein 3.30.70.1380 98 6 75 3.05 4.04
1mlaA01 77.64 Fatty acid biosynthesisMetabolic pathwaysMalonyl CoA-acyl carrier protein transacylase[acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]Escherichia coli K-12 3.30.70.250 73 16 86 3.88 4.49
1rwuA00 77.57 Hypothetical proteinUPF0250 protein ybeDEscherichia coli K-12 3.30.70.1460 87 13 71 3.36 4.71
1o8bA02 77.43 Pentose phosphate pathwayMetabolic pathwaysRibose 5-phosphate isomerase A [EC:5.3.1.6]Escherichia coli K-12Ribose-5-phosphate isomerase A 3.30.70.260 69 14 86 3.52 4.07
2x3dF01 77.27 Hypothetical proteinSulfolobus solfataricusPutative uncharacterized protein 3.30.70.1340 84 13 83 3.25 3.90
1sc6A03 77.27 Glycine, serine and threonine metabolismMetabolic pathwaysD-3-phosphoglycerate dehydrogenase [EC:1.1.1.95]D-3-phosphoglycerate dehydrogenaseEscherichia coli K-12 3.30.70.260 79 10 83 3.81 4.56
1ayeA01 77.06 Carboxypeptidase A2 [EC:3.4.17.15]Homo sapiensMetallocarboxypeptidase activityVacuolar protein catabolic processCarboxypeptidase A2 3.30.70.340 99 8 69 3.44 4.94
2do0A01 76.85 Protein domain specific bindingIntegral to plasma membraneParaspecklesAlternative nuclear mRNA splicing, via spliceosomeHeterogeneous nuclear ribonucleoprotein M 3.30.70.330 76 5 85 3.87 4.52
1zpvB00 76.79 ACT domain-containing proteinUPF0237 protein SP_0238Streptococcus pneumoniae 3.30.70.260 81 14 82 4.12 4.98
2rb7A02 76.76 Peptidase, M20/M25/M40 familyDesulfovibrio desulfuricans subsp. desulfuricans str. G20 3.30.70.360 98 13 68 3.00 4.39
1vk8A00 76.71 Thermotoga maritimaPutative uncharacterized protein 3.30.70.930 91 8 68 2.83 4.15
1vlyA02 76.36 RNA modificationTRNA-modifying protein ygfZFolic acid bindingEscherichia coli K-12 3.30.70.1400 84 6 69 2.90 4.20
1r8hA00 75.18 Human papillomavirus type 6aRegulatory protein E2 3.30.70.330 87 5 78 3.34 4.27
1kn6A00 74.16 Mus musculusPeptide hormone processingSerine-type endopeptidase activityNeuroendocrine convertase 1Proprotein convertase subtilisin/kexin type 1 [EC:3.4.21.93] 3.30.70.850 73 5 86 4.11 4.75
2jwnA01 73.36 CytoplasmPoly(A) RNA bindingXenopus laevisEmbryonic polyadenylate-binding protein 2-B 3.30.70.330 100 12 66 3.15 4.77
2vqeJ00 72.06 RibosomeThermus thermophilus HB8Small subunit ribosomal protein S1030S ribosomal protein S10 3.30.70.600 98 14 68 3.10 4.53
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Displaying entries 1 to 50 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2vd3A03
KRLVMLNIDRKNLDRVRALMPGMTGPTVSEVLSDNGVVAVHAVVDEKEVFNLINRLKAVGARDILVVPIERIIP
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2vd3A03
KRLVMLNIDRKNLDRVRALMPGMTGPTVSEVLSDNGVVAVHAVVDEKEVFNLINRLKAVGARDILVVPIERIIP
BLAST against CATH

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Domain History Events (8)

Domain assigned by auto on 09 Nov 2008 18:45

Assigning to "3.30.70.120" based on similarity with "2vd3B03"

Flow stage update by auto on 09 Nov 2008 18:44

No in_process hits for Domain "2vd3A03" ready to be processed

Update comment by auto on 09 Nov 2008 18:17

Domain "2vd3A03" hits Domain "2vd3B03" (100% over 100%) which is currently in process

Flow stage update by auto on 09 Nov 2008 17:55

Domain "2vd3A03" hits Domain "2vd3B03" (100% over 100%) which is currently in process

Flow stage update by auto on 09 Nov 2008 17:55

NW result present for Domain "2vd3A03"

Flow stage update by auto on 08 Nov 2008 11:29

All required files are present for Domain "2vd3A03"

Flow stage update by auto on 07 Nov 2008 11:15

Beginning processing for Domain "2vd3A03"

Insertion by auto on 07 Nov 2008 11:11

Final ChopClose added based on similarity with "1h3dA"