CATH Domain: 2vc4A01 XML data for domain: 2vc4A01

Molscript image for 2vc4A01
2vc4A01
PDB coordinates for domain 2vc4A01

PDB 2vc4, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.420 Ricin (A subunit); domain 1
3.40.420.10 Ricin (A subunit), domain 1 Gene3D
3.40.420.10.3
3.40.420.10.3.1
3.40.420.10.3.1.1
3.40.420.10.3.1.1.1
3.40.420.10.3.1.1.1.1

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Segment boundaries for domain 2vc4A01

Chopping figure for domain 2vc4A01
DomainStart PDB ResidueStop PDB Residue
2vc4A01 5 179
2vc4A02 180 267

Structural Neighbourhood (4 entries)

There are 4 matching structural neighberhood comparisons for CATH ID 3.40.420.10.3.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 4 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
3ktzA01 91.46 Ribosome-inactivating protein geloninGelonium multiflorum 3.40.420.10 168 34 96 1.73 1.80
1abrA01 90.91 RRNA N-glycosylase activityAbrus precatoriusAbrin-aGalactose bindingNegative regulation of translation 3.40.420.10 166 42 94 1.69 1.78
3hisA01 88.26 Saponaria officinalisSaporin-L3 3.40.420.10 176 22 94 2.48 2.63
1r4pA01 86.87 Pathogenic Escherichia coli infectionShiga toxin subunit AShiga-like toxin 2 subunit AEnterobacteria phage 933W 3.40.420.10 170 16 89 2.83 3.17
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Displaying entries 1 to 4 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2vc4A01
QYPIINFTTAGATVQSYTNFIRAVRGRLTTGADVRHEIPVLPNRVGLPINQRFILVELSNHAELSVTLALDVTNAYVVGY
RAGNSAYFFHPDNQEDAEAITHLFTDVQNRYTFAFGGNYDRLEQLAGNLRENIELGNGPLEEAISALYYYSTGGTQLPTL
ARSFIICIQMISDAA
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2vc4A01
IFPKQYPIINFTTAGATVQSYTNFIRAVRGRLTTGADVRHEIPVLPNRVGLPINQRFILVELSNHAELSVTLALDVTNAY
VVGYRAGNSAYFFHPDNQEDAEAITHLFTDVQNRYTFAFGGNYDRLEQLAGNLRENIELGNGPLEEAISALYYYSTGGTQ
LPTLARSFIICIQMISDAA
BLAST against CATH

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Domain History Events (6)

Domain assigned by auto on 23 Nov 2007 14:33

Assigning to "3.40.420.10" based on similarity with "1apgA01"

Flow stage update by auto on 23 Nov 2007 14:05

No in_process hits for Domain "2vc4A01" ready to be processed

Flow stage update by auto on 23 Nov 2007 14:03

NW result present for Domain "2vc4A01"

Flow stage update by auto on 23 Nov 2007 14:02

All required files are present for Domain "2vc4A01"

Flow stage update by auto on 13 Nov 2007 22:04

Beginning processing for Domain "2vc4A01"

Insertion by auto on 13 Nov 2007 22:03

Final ChopClose added based on similarity with "1apgA"