CATH Domain: 2vbaA01 XML data for domain: 2vbaA01

Molscript image for 2vbaA01
2vbaA01
PDB coordinates for domain 2vbaA01

PDB 2vba, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.47 Peroxisomal Thiolase; Chain A, domain 1
3.40.47.10 Gene3D
3.40.47.10.16
3.40.47.10.16.1
3.40.47.10.16.1.1
3.40.47.10.16.1.1.1
3.40.47.10.16.1.1.1.1

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Segment boundaries for domain 2vbaA01

Chopping figure for domain 2vbaA01
DomainStart PDB ResidueStop PDB Residue
2vbaA01 6 259
2vbaA02 260 404

Structural Neighbourhood (2 entries)

There are 2 matching structural neighberhood comparisons for CATH ID 3.40.47.10.16.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 2 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1tqyA01 88.07 3-oxoacyl-ACP synthase I [EC:2.3.1.-]Biosynthesis of type II polyketide backboneStreptomyces coelicolorActinorhodin polyketide putative beta-ketoacyl synthase 1 3.40.47.10 261 29 95 2.02 2.11
1tqyB01 87.95 Actinorhodin polyketide putative beta-ketoacyl synthase 2Biosynthesis of type II polyketide backboneStreptomyces coelicolor3-oxoacyl-ACP synthase II [EC:2.3.1.-] 3.40.47.10 254 21 97 1.71 1.75
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Displaying entries 1 to 2 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2vbaA01
ITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVKLDTTGLIDRKVVRFMSDASIYAFLSMEQAIAD
AGLSPEAYQNNPRVGLIAGSGGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACAT
SAHCIGNAVEQIQLGKQDIVFAGGGEELCWEMACEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGMVVVEELEH
ALARGAHIYAEIVG
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2vbaA01
ITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVKLDTTGLIDRKVVRFMSDASIYAFLSMEQAIAD
AGLSPEAYQNNPRVGLIAGSGGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACAT
SAHCIGNAVEQIQLGKQDIVFAGGGEELCWEMACEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGMVVVEELEH
ALARGAHIYAEIVG
BLAST against CATH

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Domain History Events (8)

Domain assigned by auto on 30 Dec 2007 02:28

Assigning to "3.40.47.10" based on similarity with "2vbaD01"

Flow stage update by auto on 30 Dec 2007 02:28

No in_process hits for Domain "2vbaA01" ready to be processed

Update comment by auto on 29 Dec 2007 23:13

Domain "2vbaA01" hits Domain "2vbaD01" (100% over 100%) which is currently in process

Flow stage update by auto on 29 Dec 2007 23:03

Domain "2vbaA01" hits Domain "2vbaD01" (100% over 100%) which is currently in process

Flow stage update by auto on 29 Dec 2007 23:03

NW result present for Domain "2vbaA01"

Flow stage update by auto on 29 Dec 2007 08:06

All required files are present for Domain "2vbaA01"

Flow stage update by auto on 28 Dec 2007 11:49

Beginning processing for Domain "2vbaA01"

Insertion by auto on 28 Dec 2007 11:16

Final ChopClose added based on similarity with "1fj4A"