CATH Domain: 2vapA02 XML data for domain: 2vapA02

Molscript image for 2vapA02
2vapA02
PDB coordinates for domain 2vapA02

PDB 2vap, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.1330 60s Ribosomal Protein L30; Chain: A;
3.30.1330.20 Gene3D
3.30.1330.20.2
3.30.1330.20.2.1
3.30.1330.20.2.1.1
3.30.1330.20.2.1.1.1
3.30.1330.20.2.1.1.1.1

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Segment boundaries for domain 2vapA02

Chopping figure for domain 2vapA02
DomainStart PDB ResidueStop PDB Residue
2vapA01 38 249
2vapA02 250 354

Structural Neighbourhood (8 entries)

There are 8 matching structural neighberhood comparisons for CATH ID 3.30.1330.20.2.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 8 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1rq2B02 90.24 Cell division protein FtsZCell division protein ftsZMycobacterium tuberculosis 3.30.1330.20 96 36 87 1.52 1.73
1tvkB02 79.18 Gap junctionPathogenic Escherichia coli infectionTubulin betaBos taurusTubulin beta-2B chain 3.30.1330.20 114 7 78 3.09 3.91
1tvkA02 78.21 Gap junctionTubulin alphaTubulin alpha-1D chainBos taurus 3.30.1330.20 115 6 78 3.23 4.13
2otmA00 77.07 Shewanella oneidensisPutative uncharacterized protein 3.30.1330.40 144 5 61 2.88 4.71
1qu9A00 76.97 UPF0076 protein YjgFUPF0076 protein yjgFMembraneEscherichia coli K-12 3.30.1330.40 126 4 68 2.97 4.35
3d01E00 76.45 Agrobacterium tumefaciens str. C58Putative uncharacterized protein 3.30.1330.40 152 8 59 2.60 4.39
1jd1B00 75.65 Protein HMF1NucleusSaccharomyces cerevisiaeProtein bindingCytosol 3.30.1330.40 125 7 67 3.11 4.63
2ewcB00 75.30 Streptococcus pyogenes serotype M1Putative uncharacterized protein 3.30.1330.40 117 6 69 3.28 4.74
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Displaying entries 1 to 8 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2vapA02
MIGIGESDSEKRAKEAVSMALNSPLLDVDIDGATGALIHVMGPEDLTLEEAREVVATVSSRLDPNATIIWGATIDENLEN
TVRVLLVITGVQSRIEFTDTGLKRK
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2vapA02
MIGIGESDSEKRAKEAVSMALNSPLLDVDIDGATGALIHVMGPEDLTLEEAREVVATVSSRLDPNATIIWGATIDENLEN
TVRVLLVITGVQSRIEFTDTGLKRKKLELTGIPKI
BLAST against CATH

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Domain History Events (6)

Domain assigned by auto on 01 Dec 2007 14:14

Assigning to "3.30.1330.20" based on similarity with "1w58102"

Flow stage update by auto on 01 Dec 2007 14:04

No in_process hits for Domain "2vapA02" ready to be processed

Flow stage update by auto on 01 Dec 2007 14:04

NW result present for Domain "2vapA02"

Flow stage update by auto on 24 Nov 2007 14:39

All required files are present for Domain "2vapA02"

Flow stage update by auto on 24 Nov 2007 02:37

Beginning processing for Domain "2vapA02"

Insertion by auto on 23 Nov 2007 18:30

Final ChopClose added based on similarity with "1w59B"