CATH Domain: 2vapA01 XML data for domain: 2vapA01

Molscript image for 2vapA01
2vapA01
PDB coordinates for domain 2vapA01

PDB 2vap, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.1440 Gene3D
3.40.50.1440.1
3.40.50.1440.1.1
3.40.50.1440.1.1.1
3.40.50.1440.1.1.1.1
3.40.50.1440.1.1.1.1.1

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Segment boundaries for domain 2vapA01

Chopping figure for domain 2vapA01
DomainStart PDB ResidueStop PDB Residue
2vapA01 38 249
2vapA02 250 354

Structural Neighbourhood (2 entries)

There are 2 matching structural neighberhood comparisons for CATH ID 3.40.50.1440.1.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 2 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2btoA01 81.87 TubulinProsthecobacter dejongeii 3.40.50.1440 262 17 75 2.76 3.63
3cb2B01 81.50 Polar microtubuleStructural constituent of cytoskeletonTubulin gamma-1 chainGamma-tubulin complexTubulin gamma 3.40.50.1440 265 19 77 2.92 3.76
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Displaying entries 1 to 2 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2vapA01
AKITVVGCGGAGNNTITRLKMEGIEGAKTVAINTDAQQLIRTKADKKILIGKKLTRGLGAGGNPKIGEEAAKESAEEIKA
AIQDSDMVFITCGLGGGTGTGSAPVVAEISKKIGALTVAVVTLPFVMEGKVRMKNAMEGLERLKQHTDTLVVIPNEKLFE
IVPNMPLKLAFKVADEVLINAVKGLVELITKDGLINVDFADVKAVMNNGGLA
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2vapA01
AKITVVGCGGAGNNTITRLKMEGIEGAKTVAINTDAQQLIRTKADKKILIGKKLTRGLGAGGNPKIGEEAAKESAEEIKA
AIQDSDMVFITCGLGGGTGTGSAPVVAEISKKIGALTVAVVTLPFVMEGKVRMKNAMEGLERLKQHTDTLVVIPNEKLFE
IVPNMPLKLAFKVADEVLINAVKGLVELITKDGLINVDFADVKAVMNNGGLA
BLAST against CATH

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Domain History Events (6)

Domain assigned by auto on 01 Dec 2007 14:13

Assigning to "3.40.50.1440" based on similarity with "1fszA01"

Flow stage update by auto on 01 Dec 2007 14:04

No in_process hits for Domain "2vapA01" ready to be processed

Flow stage update by auto on 01 Dec 2007 14:04

NW result present for Domain "2vapA01"

Flow stage update by auto on 24 Nov 2007 14:39

All required files are present for Domain "2vapA01"

Flow stage update by auto on 24 Nov 2007 02:37

Beginning processing for Domain "2vapA01"

Insertion by auto on 23 Nov 2007 18:30

Final ChopClose added based on similarity with "1w59B"