CATH Domain: 2sqcA01 XML data for domain: 2sqcA01

Molscript image for 2sqcA01
2sqcA01
PDB coordinates for domain 2sqcA01

PDB 2sqc, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.50 Alpha/alpha barrel
1.50.10 Glycosyltransferase
1.50.10.20 Gene3D
1.50.10.20.4
1.50.10.20.4.1
1.50.10.20.4.1.1
1.50.10.20.4.1.1.1
1.50.10.20.4.1.1.1.1

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Segment boundaries for domain 2sqcA01

Chopping figure for domain 2sqcA01
DomainStart PDB ResidueStop PDB Residue
2sqcA01 10 35
2sqcA01 308 628
2sqcA02 36 307

Structural Neighbourhood (1 entries)

There are 1 matching structural neighberhood comparisons for CATH ID 1.50.10.20.4.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 1 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1w6kA02 86.57 Steroid biosynthesisCholesterol biosynthetic processLanosterol synthase [EC:5.4.99.7]Homo sapiensLanosterol synthase activity 1.50.10.20 376 28 91 2.78 3.03
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Displaying entries 1 to 1 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2sqcA01
AYARTLDRAVEYLLSCQKDEGYWWGPISPVWDTGLAVLALRAAGLPADHDRLVKAGEWLLDRQITVPGDWAVKRPNLKPG
GFAFQFDNVYYPDVCDTAVVVWALNTLRLPDERRRRDAMTKGFRWIVGMQSSNGGWGAYDVDNTSDLPNHIPFSDFGEVT
DPPSEDVTAHVLECFGSFGYDDAWKVIRRAVEYLKREQKPDGSWFGRWGVNYLYGTGAVVSALKAVGIDTREPYIQKALD
WVEQHQNPDGGWGEDCRSYEDPAYAGKGASTPSQTAWALMALIAGGRAESEAARRGVQYLVETQRPDGGWDEPYYTGTGF
PGDFYLGYTMYRHVFPTLALGRYKQAI
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2sqcA01
AYARTLDRAVEYLLSCQKDEGYWWGPISPVWDTGLAVLALRAAGLPADHDRLVKAGEWLLDRQITVPGDWAVKRPNLKPG
GFAFQFDNVYYPDVCDTAVVVWALNTLRLPDERRRRDAMTKGFRWIVGMQSSNGGWGAYDVDNTSDLPNHIPFSDFGEVT
DPPSEDVTAHVLECFGSFGYDDAWKVIRRAVEYLKREQKPDGSWFGRWGVNYLYGTGAVVSALKAVGIDTREPYIQKALD
WVEQHQNPDGGWGEDCRSYEDPAYAGKGASTPSQTAWALMALIAGGRAESEAARRGVQYLVETQRPDGGWDEPYYTGTGF
PGDFYLGYTMYRHVFPTLALGRYKQAI
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:22

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:22

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:56

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"