CATH Domain: 2spcA00 XML data for domain: 2spcA00

Molscript image for 2spcA00
2spcA00
PDB coordinates for domain 2spcA00

PDB 2spc, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.20 Up-down Bundle
1.20.58 Methane Monooxygenase Hydroxylase; Chain G, domain 1
1.20.58.60 Gene3D
1.20.58.60.1
1.20.58.60.1.1
1.20.58.60.1.1.1
1.20.58.60.1.1.1.1
1.20.58.60.1.1.1.1.1

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Segment boundaries for domain 2spcA00

Chopping figure for domain 2spcA00
DomainStart PDB ResidueStop PDB Residue
2spcA00 0 106

Structural Neighbourhood (8 entries)

There are 8 matching structural neighberhood comparisons for CATH ID 1.20.58.60.1.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 8 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1jq0A00 83.29 Simian immunodeficiency virusEnvelope glycoprotein 1.10.287.210 71 14 62 2.56 4.09
2r9iA00 80.04 Putative phage capsid proteinCorynebacterium diphtheriae 1.10.287.80 69 14 64 2.58 4.00
1ci6A00 79.69 Positive regulation of transcription from RNA polymerase II promoterCellular amino acid metabolic processNeurotrophin signaling pathwayActivating transcription factor 4Sequence-specific DNA binding transcription factor activity 1.20.5.170 56 8 52 1.68 3.21
1t72D02 79.49 Phosphate transport system protein phoU homologPhosphate transport system proteinAquifex aeolicus 1.20.58.220 105 4 67 2.94 4.37
2e2aA00 78.35 Lactococcus lactis subsp. lactisLactose-specific phosphotransferase enzyme IIA component 1.20.58.80 104 4 64 3.19 4.95
1n7sD00 78.30 SNARE interactions in vesicular transportSleepRattus norvegicusRegulation of synaptogenesisVoltage-gated potassium channel complex 1.20.5.110 66 3 57 2.53 4.37
3bz1Z00 77.36 PhotosynthesisThermosynechococcus elongatus BP-1Photosystem II reaction center protein ZPhotosystem II PsbZ proteinMetabolic pathways 1.10.287.740 62 1 57 2.80 4.83
1lrzA03 76.60 Peptidoglycan biosynthesisMetabolic pathwaysPeptidoglycan pentaglycine glycine transferase (the second and third glycine) [EC:2.3.2.-]Aminoacyltransferase femAStaphylococcus aureus 1.20.58.90 62 8 55 2.13 3.86
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Displaying entries 1 to 8 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2spcA00
QNLDLQLYMRDCELAESWMSAREAFLNADDDANAGGNVEALIKKHEDFDKAINGHEQKIAALQTVADQLIAQNHYASNLV
DEKRKQVLERWRHLKEGLIEKRSRLGD
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2spcA00
QNLDLQLYMRDCELAESWMSAREAFLNADDDANAGGNVEALIKKHEDFDKAINGHEQKIAALQTVADQLIAQNHYASNLV
DEKRKQVLERWRHLKEGLIEKRSRLGD
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:17

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:17

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:39

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"