CATH Domain: 2rkiA05 XML data for domain: 2rkiA05

Molscript image for 2rkiA05
2rkiA05
PDB coordinates for domain 2rkiA05

PDB 2rki, Chain A, Domain 5

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.420 Nucleotidyltransferase; domain 5
3.30.420.10 Gene3D
3.30.420.10.18
3.30.420.10.18.1
3.30.420.10.18.1.1
3.30.420.10.18.1.1.1
3.30.420.10.18.1.1.1.1

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Segment boundaries for domain 2rkiA05

Chopping figure for domain 2rkiA05
DomainStart PDB ResidueStop PDB Residue
2rkiA01 1 90
2rkiA01 116 156
2rkiA02 91 115
2rkiA02 157 225
2rkiA03 226 319
2rkiA04 320 426
2rkiA05 427 552

Structural Neighbourhood (1 entries)

There are 1 matching structural neighberhood comparisons for CATH ID 3.30.420.10.18.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 1 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1lwcA05 91.17 HIV-1 M:B_HXB2RGag-Pol polyprotein 3.30.420.10 91 100 72 0.39 0.54
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Displaying entries 1 to 1 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2rkiA05
YQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQYALGII
QAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLV
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2rkiA05
YQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQYALGII
QAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLV
BLAST against CATH

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Domain History Events (6)

Domain assigned by auto on 27 Apr 2008 11:31

Assigning to "3.30.420.10" based on similarity with "1jkhA05"

Flow stage update by auto on 27 Apr 2008 11:08

No in_process hits for Domain "2rkiA05" ready to be processed

Flow stage update by auto on 27 Apr 2008 11:08

NW result present for Domain "2rkiA05"

Flow stage update by auto on 26 Apr 2008 08:55

All required files are present for Domain "2rkiA05"

Flow stage update by auto on 25 Apr 2008 23:50

Beginning processing for Domain "2rkiA05"

Insertion by auto on 25 Apr 2008 23:08

Final ChopClose added based on similarity with "1jkhA"