CATH Domain: 2rk3A00 XML data for domain: 2rk3A00

Molscript image for 2rk3A00
2rk3A00
PDB coordinates for domain 2rk3A00

PDB 2rk3, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.880 Gene3D
3.40.50.880.2
3.40.50.880.2.2
3.40.50.880.2.2.1
3.40.50.880.2.2.1.1
3.40.50.880.2.2.1.1.1

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Segment boundaries for domain 2rk3A00

Chopping figure for domain 2rk3A00
DomainStart PDB ResidueStop PDB Residue
2rk3A00 2 188

Structural Neighbourhood (7 entries)

There are 7 matching structural neighberhood comparisons for CATH ID 3.40.50.880.2.2.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 7 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1oi4A00 87.05 Protease I [EC:3.2.-.-]Response to pHResponse to heatProtein yhbOEscherichia coli K-12 3.40.50.880 191 21 85 1.96 2.29
3cneA00 84.69 Putative protease IBacteroides thetaiotaomicron 3.40.50.880 167 18 82 2.30 2.80
3bhnA00 83.76 ThiJ/PfpI domain proteinShewanella loihica PV-4 3.40.50.880 196 14 88 3.06 3.45
1u9cA00 83.71 Geobacillus kaustophilusHypothetical conserved protein 3.40.50.880 220 22 76 2.62 3.43
2fexA00 82.99 Agrobacterium tumefaciens str. C58Putative uncharacterized protein 3.40.50.880 172 22 84 2.92 3.45
1vhqA00 82.75 Isoprenoid biosynthetic processPositive regulation of isoprenoid metabolic processProtein bindingEscherichia coli K-12Enhancing lycopene biosynthesis protein 2 3.40.50.880 209 17 75 2.51 3.34
1qvzA00 81.00 Probable chaperone protein HSP31Soluble fractionSaccharomyces cerevisiaeProtein binding 3.40.50.880 231 16 70 2.62 3.71
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Displaying entries 1 to 7 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2rk3A00
ASKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQN
LSESAAVKEILKEQENRKGLIATICAGPTALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTS
FEFALAIVEALNGKEVAAQVKAPLVLK
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2rk3A00
MASKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQ
NLSESAAVKEILKEQENRKGLIATICAGPTALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGT
SFEFALAIVEALNGKEVAAQVKAPLVLKDLEHHHHHH
BLAST against CATH

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Domain History Events (8)

Domain assigned by auto on 20 Jan 2008 05:27

Assigning to "3.40.50.880" based on similarity with "1pe0A00"

Flow stage update by auto on 20 Jan 2008 05:26

No in_process hits for Domain "2rk3A00" ready to be processed

Update comment by auto on 19 Jan 2008 23:15

Domain "2rk3A00" hits Domain "2rk6A00" (96.875% over 95.9390862944162%) which is currently in process

Flow stage update by auto on 19 Jan 2008 23:04

Domain "2rk3A00" hits Domain "2rk6A00" (96.875% over 95.9390862944162%) which is currently in process

Flow stage update by auto on 19 Jan 2008 23:04

NW result present for Domain "2rk3A00"

Flow stage update by auto on 19 Jan 2008 11:04

All required files are present for Domain "2rk3A00"

Flow stage update by auto on 18 Jan 2008 11:54

Beginning processing for Domain "2rk3A00"

Insertion by auto on 18 Jan 2008 11:13

Final ChopClose added based on similarity with "1pe0A"