CATH Domain: 2rh2A00 XML data for domain: 2rh2A00

Molscript image for 2rh2A00
2rh2A00
PDB coordinates for domain 2rh2A00

PDB 2rh2, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.30 Roll
2.30.30 SH3 type barrels.
2.30.30.60 Gene3D
2.30.30.60.1
2.30.30.60.1.1
2.30.30.60.1.1.1
2.30.30.60.1.1.1.1
2.30.30.60.1.1.1.1.1

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Segment boundaries for domain 2rh2A00

Chopping figure for domain 2rh2A00
DomainStart PDB ResidueStop PDB Residue
2rh2A00 21 78

Structural Neighbourhood (29 entries)

There are 29 matching structural neighberhood comparisons for CATH ID 2.30.30.60.1.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 29 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1mhnA00 86.16 Survival motor neuron proteinSurvival motor neuron proteinHomo sapiensProtein binding 2.30.30.140 59 14 89 2.63 2.93
1sf9A02 85.60 Bacillus subtilisUncharacterized protein yfhH 2.30.30.340 54 11 89 1.81 2.02
2g3rA01 85.23 CytoplasmHomo sapiensTumor suppressor p53-binding protein 1Protein binding 2.30.30.140 53 13 85 2.30 2.68
2vv5A02 83.52 Escherichia coli O157:H7Small conductance mechanosensitive ion channel, MscS familySmall-conductance mechanosensitive channel 2.30.30.60 50 12 78 2.24 2.84
1pfbA00 82.39 Specification of segmental identity, abdomenPRC1 complexMethylated histone residue bindingChromobox protein 8Nucleolus 2.40.50.40 55 7 77 2.52 3.26
1q3lA00 82.29 Chromatin bindingPositive regulation of transcription, DNA-dependentChromobox protein 5Drosophila melanogasterPolytene chromosome, telomeric region 2.40.50.40 52 9 73 2.12 2.88
1mmdA01 81.99 ActomyosinMyosin II complexActin-myosin filament slidingProtein localizationActin filament binding 2.30.30.360 48 8 75 2.89 3.83
1biaA03 81.51 Biotin metabolismDNA bindingBirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]Bifunctional protein birABiotin-[acetyl-CoA-carboxylase] ligase activity 2.30.30.100 47 10 80 2.46 3.05
2k57A00 80.43 Pseudomonas syringae pv. phaseolicola 1448ALipoprotein, putative 2.30.30.100 55 5 87 4.05 4.62
2hqxA01 79.49 Staphylococcal nuclease domain-containing protein 1NucleusGolgi apparatusTranscription cofactor activityHomo sapiens 2.30.30.140 81 12 64 2.49 3.88
1n9rB00 79.14 Protein bindingNuclear mRNA splicing, via spliceosomeSmall nuclear ribonucleoprotein FSmall nuclear ribonucleoprotein FU5 snRNP 2.30.30.100 69 8 76 3.32 4.32
1u1sA00 78.94 RNA degradationPseudomonas aeruginosaHost factor-I proteinProtein hfq 2.30.30.100 66 14 72 3.19 4.39
1m5q101 78.84 Pyrobaculum aerophilumSmall nuclear ribonucleoprotein homolog (Sm-like) 2.30.30.100 67 7 76 2.74 3.60
1d3bC00 78.44 SpliceosomeSystemic lupus erythematosusSmall nuclear ribonucleoprotein Sm D3Small nuclear ribonucleoprotein D3Spliceosomal complex 2.30.30.100 71 8 74 3.14 4.21
1ib8A02 78.19 Hypothetical proteinRibosome maturation factor rimPStreptococcus pneumoniae 2.30.30.180 67 7 77 2.73 3.52
1mgqF00 78.13 Methanothermobacter thermautotrophicus str. Delta HSmall nuclear ribonucleoproteinPutative snRNP Sm-like protein 2.30.30.100 70 5 70 3.05 4.36
1kq1H00 77.39 RNA degradationHost factor-I proteinSimilar to host factor-1Staphylococcus aureus subsp. aureus Mu50 2.30.30.100 66 10 74 3.31 4.46
3f70B02 77.34 CytoplasmMethylated histone residue bindingLethal(3)malignant brain tumor-like protein 2Homo sapiens 2.30.30.160 88 7 59 2.58 4.37
1tovA00 77.22 Caenorhabditis elegansTubulin-specific chaperone B 2.30.30.190 97 10 58 2.67 4.54
1vq8Q00 76.82 50S ribosomal protein L21eRibosomeLarge subunit ribosomal protein L21eHaloarcula marismortui 2.30.30.70 95 21 54 2.36 4.31
1b34A00 76.36 SpliceosomeSystemic lupus erythematosusSmall nuclear ribonucleoprotein Sm D1RNA bindingProtein binding 2.30.30.100 80 8 63 2.89 4.53
2f1lA02 76.11 Pseudomonas aeruginosaRibosome maturation factor rimM16S rRNA processing protein RimM 2.30.30.240 72 12 73 3.66 4.97
1irxA02 76.10 Aminoacyl-tRNA biosynthesisLysyl-tRNA synthetase, class I [EC:6.1.1.6]Pyrococcus horikoshiiLysyl-tRNA synthetase 2.30.30.300 43 4 75 3.15 4.18
1ljoA00 76.09 Archaeoglobus fulgidusSnRNP, putative 2.30.30.100 75 8 65 2.83 4.33
1d3bB00 75.61 Small nuclear ribonucleoprotein-associated proteins B and B'Spliceosomal complexU7 snRNPHomo sapiensProtein binding 2.30.30.100 81 7 62 3.12 4.96
1n27A00 75.50 Mus musculusCytoplasmHepatoma-derived growth factor-related protein 3Nucleus 2.30.30.160 96 14 54 2.40 4.43
3fb9B00 75.22 Streptococcus pneumoniaePutative uncharacterized protein 2.30.30.100 84 12 61 2.91 4.70
1v76B00 74.79 Pyrococcus horikoshiiRibonuclease P protein component 1Ribonuclease P subunit P29 [EC:3.1.26.5] 2.30.30.210 91 12 52 2.37 4.49
1ts9A00 72.98 Ribonuclease P protein component 1Archaeoglobus fulgidusRibonuclease P subunit P29 [EC:3.1.26.5] 2.30.30.210 93 8 50 2.31 4.57
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Displaying entries 1 to 29 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2rh2A00
NATFGMGDRVRKKSGAAWQGQIVGWYCTNLTPEGYAVESEAHPGSVQIYPVAALERIN
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2rh2A00
VFPSNATFGMGDRVRKKSGAAWQGQIVGWYCTNLTPEGYAVESEAHPGSVQIYPVAALERIN
BLAST against CATH

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Domain History Events (6)

Domain assigned by auto on 27 Jul 2008 11:33

Assigning to "2.30.30.60" based on similarity with "1vieA00"

Flow stage update by auto on 27 Jul 2008 11:12

No in_process hits for Domain "2rh2A00" ready to be processed

Flow stage update by auto on 27 Jul 2008 11:11

NW result present for Domain "2rh2A00"

Flow stage update by auto on 26 Jul 2008 11:49

All required files are present for Domain "2rh2A00"

Flow stage update by auto on 25 Jul 2008 19:45

Beginning processing for Domain "2rh2A00"

Insertion by auto on 25 Jul 2008 17:32

Final ChopClose added based on similarity with "1vieA"