CATH Domain: 2rgiA00 XML data for domain: 2rgiA00

Molscript image for 2rgiA00
2rgiA00
PDB coordinates for domain 2rgiA00

PDB 2rgi, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.238 Recoverin; domain 1
1.10.238.10 EF-hand Gene3D
1.10.238.10.7
1.10.238.10.7.2
1.10.238.10.7.2.1
1.10.238.10.7.2.1.1
1.10.238.10.7.2.1.1.1

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Segment boundaries for domain 2rgiA00

Chopping figure for domain 2rgiA00
DomainStart PDB ResidueStop PDB Residue
2rgiA00 1 93

Structural Neighbourhood (21 entries)

There are 21 matching structural neighberhood comparisons for CATH ID 1.10.238.10.7.2.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 21 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1xk4E00 89.88 Protein S100-A8Calcium ion bindingHomo sapiensInflammatory responseProtein binding 1.10.238.10 89 25 91 1.90 2.09
1a4pA00 89.66 Protein S100-A10Homo sapiens 1.10.238.10 92 35 91 2.34 2.56
1qx2A00 88.05 Protein S100-GBos taurus 1.10.238.10 75 29 81 2.60 3.19
1topA02 86.64 Gallus gallusTroponin C, skeletal muscle 1.10.238.10 87 18 82 3.01 3.64
1g33A00 85.16 Rattus norvegicusParvalbumin alpha 1.10.238.10 73 17 80 3.32 4.13
1ggzA01 85.11 Calcium ion bindingOlfactory transductionCalcium signaling pathwayPhosphatidylinositol signaling systemInsulin signaling pathway 1.10.238.10 76 18 81 3.42 4.19
1wrkA00 84.94 Cardiac muscle contractionCalcium signaling pathwayDilated cardiomyopathyHypertrophic cardiomyopathy (HCM)Calcium ion binding 1.10.238.10 82 17 83 3.94 4.70
2f3yA02 84.14 Phosphatidylinositol signaling systemCalcium signaling pathwayOocyte meiosisMelanogenesisInsulin signaling pathway 1.10.238.10 68 11 74 2.83 3.79
1dtlA02 84.13 Cardiac muscle contractionCalcium signaling pathwayTroponin C, slow skeletal and cardiac musclesGallus gallusTroponin C, slow skeletal and cardiac muscles 1.10.238.10 63 22 68 3.31 4.80
1g4yR01 84.00 Calcium signaling pathwayPhosphatidylinositol signaling systemInsulin signaling pathwayOocyte meiosisGnRH signaling pathway 1.10.238.10 80 16 87 4.36 4.99
1qtxA02 83.72 1.10.238.10 68 11 74 3.08 4.12
1exrA01 83.53 Phosphatidylinositol signaling systemCalmodulinParamecium tetraureliaCalmodulin 1.10.238.10 76 17 83 3.56 4.24
1exrA02 83.17 Phosphatidylinositol signaling systemCalmodulinParamecium tetraureliaCalmodulin 1.10.238.10 67 10 73 2.98 4.05
1fi5A00 81.50 Cardiac muscle contractionCalcium signaling pathwayTroponin C, slow skeletal and cardiac musclesGallus gallusTroponin C, slow skeletal and cardiac muscles 1.10.238.10 81 18 81 3.93 4.82
1wdcB01 81.46 Myosin regulatory light chain, striated adductor muscleArgopecten irradians 1.10.238.10 70 12 79 3.85 4.85
1eg3A04 81.28 Cell surfaceCostamereCytoskeletonDystrophin-associated glycoprotein complexActin binding 1.10.238.10 82 10 82 4.00 4.83
1tizA00 81.01 Calcium-binding protein CMLArabidopsis thalianaPlant-pathogen interactionProbable calcium-binding protein CML34 1.10.238.10 66 18 71 2.65 3.72
1jfjA01 80.23 Entamoeba histolyticaCalcium-binding protein 1.10.238.10 63 17 68 2.74 3.97
2bl0B01 79.81 Physarum polycephalumMyosin regulatory light chain 1.10.238.10 68 17 75 3.63 4.79
1k90E01 78.41 Phosphatidylinositol signaling systemCalcium signaling pathwayOocyte meiosisMelanogenesisInsulin signaling pathway 1.10.238.10 74 14 81 3.21 3.93
1s26D01 75.08 Calcium signaling pathwayPhosphatidylinositol signaling systemOocyte meiosisMelanogenesisInsulin signaling pathway 1.10.238.10 59 18 64 2.86 4.44
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Displaying entries 1 to 21 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2rgiA00
MSSSLEQALAVLVTTFHKYSSQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMGSLDENSDQQVDFQEYAVFLA
LITVMSNDFFQGS
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2rgiA00
MMSSSLEQALAVLVTTFHKYSSQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMGSLDENSDQQVDFQEYAVFL
ALITVMSNDFFQGSPDRP
BLAST against CATH

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Domain History Events (6)

Domain assigned by auto on 24 Feb 2008 23:18

Assigning to "1.10.238.10" based on similarity with "1m31A00"

Flow stage update by auto on 24 Feb 2008 23:05

No in_process hits for Domain "2rgiA00" ready to be processed

Flow stage update by auto on 24 Feb 2008 23:05

NW result present for Domain "2rgiA00"

Flow stage update by auto on 24 Feb 2008 08:43

All required files are present for Domain "2rgiA00"

Flow stage update by auto on 23 Feb 2008 12:17

Beginning processing for Domain "2rgiA00"

Insertion by auto on 23 Feb 2008 09:10

Final ChopClose added based on similarity with "1m31A"