CATH Domain: 2rfgA00 XML data for domain: 2rfgA00

Molscript image for 2rfgA00
2rfgA00
PDB coordinates for domain 2rfgA00

PDB 2rfg, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.20 Alpha-Beta Barrel
3.20.20 TIM Barrel
3.20.20.70 Aldolase class I Gene3D
3.20.20.70.11
3.20.20.70.11.1
3.20.20.70.11.1.1
3.20.20.70.11.1.1.1
3.20.20.70.11.1.1.1.1

Segment boundaries for domain 2rfgA00

Chopping figure for domain 2rfgA00
DomainStart PDB ResidueStop PDB Residue
2rfgA00 1 289

Structural Neighbourhood (13 entries)

There are 13 matching structural neighberhood comparisons for CATH ID 3.20.20.70.11.1.1.1.1 (SIMAX score < 5)

Displaying entries 1 to 13 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
3lerC00 90.69 Dihydrodipicolinate synthase [EC:4.2.1.52]Dihydrodipicolinate synthaseCampylobacter jejuniLysine biosynthesisMetabolic pathways 3.20.20.70 289 36 95 1.76 1.85
1xxxB00 89.65 Metabolic pathwaysLysine biosynthesisDihydrodipicolinate synthase [EC:4.2.1.52]Dihydrodipicolinate synthaseMycobacterium tuberculosis 3.20.20.70 295 35 93 1.53 1.63
2wkjA00 87.90 Amino sugar and nucleotide sugar metabolismN-acetylneuraminate lyase [EC:4.1.3.3]N-acetylneuraminate lyase activityN-acetylneuraminate catabolic processEscherichia coli K-12 3.20.20.70 297 25 93 1.71 1.83
3e96A00 87.52 Dihydrodipicolinate synthase [EC:4.2.1.52]Bacillus clausii KSM-K16Dihydrodipicolinate synthaseMetabolic pathwaysLysine biosynthesis 3.20.20.70 296 26 92 1.69 1.83
2r8wA00 86.91 Dihydrodipicolinate synthase [EC:4.2.1.52]Agrobacterium tumefaciens str. C58Dihydrodipicolinate synthaseMetabolic pathwaysLysine biosynthesis 3.20.20.70 287 28 94 1.91 2.02
1w3iA00 85.73 2-keto-3-deoxy gluconate aldolaseSulfolobus solfataricus 3.20.20.70 293 22 92 2.22 2.40
2hmcA00 84.82 Metabolic pathwaysLysine biosynthesisDihydrodipicolinate synthase [EC:4.2.1.52]Agrobacterium tumefaciens str. C58Dihydrodipicolinate synthase 3.20.20.70 303 23 88 2.34 2.65
2tpsB00 75.62 Thiamine metabolismBacillus subtilisThiamine-phosphate pyrophosphorylaseThiamine-phosphate pyrophosphorylase [EC:2.5.1.3]Metabolic pathways 3.20.20.70 226 11 64 3.15 4.92
3f4wA00 75.34 Pentose and glucuronate interconversionsMethane metabolismPutative hexulose 6 phosphate synthaseSalmonella enterica subsp. enterica serovar Typhimurium3-hexulose-6-phosphate synthase [EC:4.1.2.43] 3.20.20.70 211 12 66 3.12 4.66
1q6oB00 74.65 Ascorbate and aldarate metabolism3-keto-L-gulonate-6-phosphate decarboxylase ulaDMagnesium ion binding3-dehydro-L-gulonate-6-phosphate decarboxylase [EC:4.1.1.85]3-dehydro-L-gulonate-6-phosphate decarboxylase activity 3.20.20.70 215 12 66 3.12 4.69
1wa3D00 74.42 Thermotoga maritimaArginine and proline metabolism2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase2-dehydro-3-deoxyphosphogluconate aldolase / 4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.16]Glyoxylate and dicarboxylate metabolism 3.20.20.70 203 7 64 3.08 4.81
1wbhB00 74.41 Arginine and proline metabolismGlyoxylate and dicarboxylate metabolismMetabolic pathwaysPentose and glucuronate interconversionsPentose phosphate pathway 3.20.20.70 214 9 63 2.88 4.55
2yw3E00 72.00 Arginine and proline metabolism2-dehydro-3-deoxyphosphogluconate aldolase / 4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.16]Glyoxylate and dicarboxylate metabolismMetabolic pathwaysThermus thermophilus HB8 3.20.20.70 198 12 60 3.00 4.93
Displaying entries 1 to 13 (page 1 of 1)


Domain ATOM Sequence

>pdb|2rfgA00
MFRGSLIAMITPFINGQVDEKALAGLVDWQIKHGAHGLVPVGTTGESPTLTEEEHKRVVALVAEQAQGRVPVIAGAGSNN
PVEAVRYAQHAQQAGADAVLCVAGYYNRPSQEGLYQHFKMVHDAIDIPIIVYNIPPRAVVDIKPETMARLAALPRIVGVK
DATTDLARISRERMLINKPFSFLSGDDMTAIAYNASGGQGCISVSANIAPALYGQMQTATLQGDFREALRIHDLLAPLHE
ALFREPSPAGAKYAASLLGLCNEECRLPIVPLSEQTKSDIKNIINELYR    

Domain COMBS Sequence

>pdb|2rfgA00
MFRGSLIAMITPFINGQVDEKALAGLVDWQIKHGAHGLVPVGTTGESPTLTEEEHKRVVALVAEQAQGRVPVIAGAGSNN
PVEAVRYAQHAQQAGADAVLCVAGYYNRPSQEGLYQHFKMVHDAIDIPIIVYNIPPRAVVDIKPETMARLAALPRIVGVK
DATTDLARISRERMLINKPFSFLSGDDMTAIAYNASGGQGCISVSANIAPALYGQMQTATLQGDFREALRIHDLLAPLHE
ALFREPSPAGAKYAASLLGLCNEECRLPIVPLSEQTKSDIKNIINELYRLEHHHHHH    

Domain History Events (8)

Domain assigned by auto on 30 Nov 2007 14:16

Assigning to "3.20.20.70" based on similarity with "2rfgB00"

Flow stage update by auto on 30 Nov 2007 14:13

No in_process hits for Domain "2rfgA00" ready to be processed

Update comment by auto on 30 Nov 2007 10:36

Domain "2rfgA00" hits Domain "2rfgB00" (100% over 100%) which is currently in process

Flow stage update by auto on 30 Nov 2007 10:16

Domain "2rfgA00" hits Domain "2rfgB00" (100% over 100%) which is currently in process

Flow stage update by auto on 30 Nov 2007 10:16

NW result present for Domain "2rfgA00"

Flow stage update by auto on 24 Nov 2007 14:39

All required files are present for Domain "2rfgA00"

Flow stage update by auto on 24 Nov 2007 02:37

Beginning processing for Domain "2rfgA00"

Insertion by auto on 23 Nov 2007 19:51

Final ChopClose added based on similarity with "2rfgB"