CATH Domain: 2rafB01 XML data for domain: 2rafB01

Molscript image for 2rafB01
2rafB01
PDB coordinates for domain 2rafB01

PDB 2raf, Chain B, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.720 NAD(P)-binding Rossmann-like Domain Gene3D
3.40.50.720.22
3.40.50.720.22.1
3.40.50.720.22.1.1
3.40.50.720.22.1.1.1
3.40.50.720.22.1.1.1.1

Segment boundaries for domain 2rafB01

Chopping figure for domain 2rafB01
DomainStart PDB ResidueStop PDB Residue
2rafB01 -16 169

Structural Neighbourhood (12 entries)

There are 12 matching structural neighberhood comparisons for CATH ID 3.40.50.720.22.1.1.1.1 (SIMAX score < 5)

Displaying entries 1 to 12 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1jayA00 82.58 Archaeoglobus fulgidusPutative uncharacterized protein 3.40.50.720 212 20 74 2.43 3.26
1txgA01 82.15 Archaeoglobus fulgidusGlycerophospholipid metabolismGlycerol-3-phosphate dehydrogenase [NAD(P)+]Glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] 3.40.50.720 180 11 75 2.55 3.38
1i36A01 79.48 Methanothermobacter thermautotrophicus str. Delta HConserved protein 3.40.50.720 159 11 76 2.74 3.60
1ks9A01 78.59 Pantothenate and CoA biosynthesisMetabolic pathways2-dehydropantoate 2-reductase [EC:1.1.1.169]2-dehydropantoate 2-reductase activityPantothenate biosynthetic process from valine 3.40.50.720 167 12 71 3.04 4.25
2amfA01 78.54 Arginine and proline metabolismMetabolic pathwaysPutative pyrroline carboxylate reductasePyrroline-5-carboxylate reductase [EC:1.5.1.2]Streptococcus pyogenes serotype M1 3.40.50.720 148 14 68 2.47 3.62
3ckyA01 78.39 Eubacterium barkeri2-hydroxymethyl glutarate dehydrogenase 3.40.50.720 163 10 73 2.76 3.77
3d1lB01 78.02 Bacteroides fragilis NCTC 9343Putative uncharacterized protein 3.40.50.720 151 9 72 3.40 4.67
1vpdA01 77.35 Glyoxylate and dicarboxylate metabolismMetabolic pathwaysSalmonella enterica subsp. enterica serovar Typhimurium2-hydroxy-3-oxopropionate reductase [EC:1.1.1.60]Tartronate semialdehyde reductase (TSAR) 3.40.50.720 154 15 71 2.78 3.88
1dljA01 76.71 Amino sugar and nucleotide sugar metabolismStarch and sucrose metabolismPentose and glucuronate interconversionsAscorbate and aldarate metabolismMetabolic pathways 3.40.50.720 204 11 68 2.80 4.08
2cvzA01 76.13 Valine, leucine and isoleucine degradationMetabolic pathwaysThermus thermophilus HB83-hydroxyisobutyrate dehydrogenase3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31] 3.40.50.720 153 15 72 3.29 4.56
1ur5C01 74.70 Malate dehydrogenase [EC:1.1.1.37]Citrate cycle (TCA cycle)Pyruvate metabolismChloroflexus aurantiacus J-10-flMetabolic pathways 3.40.50.720 136 8 50 2.27 4.49
2i76A01 73.54 Thermotoga maritimaPutative uncharacterized protein 3.40.50.720 142 6 69 3.23 4.66
Displaying entries 1 to 12 (page 1 of 1)


Domain ATOM Sequence

>pdb|2rafB01
SDKIHHHHHHENLYFQGEITIFGKGNGQAIGHNFEIAGHEVTYYGSKDQATTLGEIVIAVPYPALAALAKQYATQLKGKI
VVDITNPLNFDTWDDLVVPADSSAAQELQQQLPDSQVLKAFNTTFAATLQSGQVNGKEPTTVLVAGNDDSAKQRFTRALA
DSPLEVKDAGKLKRARELEAGF    

Domain COMBS Sequence

>pdb|2rafB01
XGSDKIHHHHHHENLYFQGXEITIFGKGNXGQAIGHNFEIAGHEVTYYGSKDQATTLGEIVIXAVPYPALAALAKQYATQ
LKGKIVVDITNPLNFDTWDDLVVPADSSAAQELQQQLPDSQVLKAFNTTFAATLQSGQVNGKEPTTVLVAGNDDSAKQRF
TRALADSPLEVKDAGKLKRARELEAXGF    

Domain History Events (9)

Domain assigned by auto on 20 Jan 2009 21:03

Assigning to "3.40.50.720" based on similarity with "2rafC01"

Flow stage update by auto on 20 Jan 2009 20:54

No in_process hits for Domain "2rafB01" ready to be processed

Update comment by auto on 20 Jan 2009 20:40

Domain "2rafB01" hits Domain "2rafC01" (98.2142857142857% over 89.3617021276596%) which is currently in process

Update comment by auto on 12 Dec 2008 20:38

Domain "2rafB01" hits Domain "2rafA01" (98.2142857142857% over 89.3617021276596%) which is currently in process

Flow stage update by auto on 12 Dec 2008 20:36

Domain "2rafB01" hits Domain "2rafA01" (98.2142857142857% over 89.3617021276596%) which is currently in process

Flow stage update by auto on 12 Dec 2008 20:35

NW result present for Domain "2rafB01"

Flow stage update by auto on 10 Dec 2008 14:16

All required files are present for Domain "2rafB01"

Flow stage update by auto on 10 Dec 2008 14:14

Beginning processing for Domain "2rafB01"

Insertion by cuff on 08 Dec 2008 15:29

nice chopping