CATH Domain: 2rafB01 XML data for domain: 2rafB01

Molscript image for 2rafB01
2rafB01
PDB coordinates for domain 2rafB01

PDB 2raf, Chain B, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.720 NAD(P)-binding Rossmann-like Domain Gene3D
3.40.50.720.16
3.40.50.720.16.1
3.40.50.720.16.1.1
3.40.50.720.16.1.1.1
3.40.50.720.16.1.1.1.1

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Segment boundaries for domain 2rafB01

Chopping figure for domain 2rafB01
DomainStart PDB ResidueStop PDB Residue
2rafB01 -16 169

Structural Neighbourhood (11 entries)

There are 11 matching structural neighberhood comparisons for CATH ID 3.40.50.720.16.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 11 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1jayA00 82.58 Archaeoglobus fulgidusPutative uncharacterized protein 3.40.50.720 212 20 74 2.43 3.26
1txgA01 82.15 Glycerol-3-phosphate dehydrogenase (NAD(P)+)Archaeoglobus fulgidusGlycerophospholipid metabolismGlycerol-3-phosphate dehydrogenase [NAD(P)+] 3.40.50.720 180 11 75 2.55 3.38
1i36A01 79.48 Methanothermobacter thermautotrophicus str. Delta HConserved protein 3.40.50.720 159 11 76 2.74 3.60
2pgdA01 78.66 Ovis aries6-phosphogluconate dehydrogenase, decarboxylating 3.40.50.720 180 8 76 3.37 4.43
1ks9A01 78.59 Pantothenate and CoA biosynthesis2-dehydropantoate 2-reductaseEscherichia coli K12 3.40.50.720 167 12 71 3.04 4.25
3ckyA01 78.39 Eubacterium barkeri2-hydroxymethyl glutarate dehydrogenase 3.40.50.720 163 10 73 2.76 3.77
1vpdA01 77.35 Glyoxylate and dicarboxylate metabolismTartronate semialdehyde reductase2-hydroxy-3-oxopropionate reductaseSalmonella typhimurium 3.40.50.720 154 15 71 2.78 3.88
1dljA01 76.71 Starch and sucrose metabolismPentose and glucuronate interconversionsNucleotide sugars metabolismAscorbate and aldarate metabolismStreptococcus pyogenes 3.40.50.720 204 11 68 2.80 4.08
2cvzA01 76.13 3-hydroxyisobutyrate dehydrogenaseValine, leucine and isoleucine degradationThermus thermophilus HB8 3.40.50.720 153 15 72 3.29 4.56
1ur5C01 74.69 3.40.50.720 136 8 50 2.27 4.49
2i76A01 73.54 Thermotoga maritimaPutative uncharacterized protein 3.40.50.720 142 6 69 3.23 4.66
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Displaying entries 1 to 11 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2rafB01
SDKIHHHHHHENLYFQGEITIFGKGNGQAIGHNFEIAGHEVTYYGSKDQATTLGEIVIAVPYPALAALAKQYATQLKGKI
VVDITNPLNFDTWDDLVVPADSSAAQELQQQLPDSQVLKAFNTTFAATLQSGQVNGKEPTTVLVAGNDDSAKQRFTRALA
DSPLEVKDAGKLKRARELEAGF
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2rafB01
XGSDKIHHHHHHENLYFQGXEITIFGKGNXGQAIGHNFEIAGHEVTYYGSKDQATTLGEIVIXAVPYPALAALAKQYATQ
LKGKIVVDITNPLNFDTWDDLVVPADSSAAQELQQQLPDSQVLKAFNTTFAATLQSGQVNGKEPTTVLVAGNDDSAKQRF
TRALADSPLEVKDAGKLKRARELEAXGF
BLAST against CATH

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Domain History Events (9)

Domain assigned by auto on 20 Jan 2009 21:03

Assigning to "3.40.50.720" based on similarity with "2rafC01"

Flow stage update by auto on 20 Jan 2009 20:54

No in_process hits for Domain "2rafB01" ready to be processed

Update comment by auto on 20 Jan 2009 20:40

Domain "2rafB01" hits Domain "2rafC01" (98.2142857142857% over 89.3617021276596%) which is currently in process

Update comment by auto on 12 Dec 2008 20:38

Domain "2rafB01" hits Domain "2rafA01" (98.2142857142857% over 89.3617021276596%) which is currently in process

Flow stage update by auto on 12 Dec 2008 20:36

Domain "2rafB01" hits Domain "2rafA01" (98.2142857142857% over 89.3617021276596%) which is currently in process

Flow stage update by auto on 12 Dec 2008 20:35

NW result present for Domain "2rafB01"

Flow stage update by auto on 10 Dec 2008 14:16

All required files are present for Domain "2rafB01"

Flow stage update by auto on 10 Dec 2008 14:14

Beginning processing for Domain "2rafB01"

Insertion by cuff on 08 Dec 2008 15:29

nice chopping