CATH Domain: 2r85A01 XML data for domain: 2r85A01

Molscript image for 2r85A01
2r85A01
PDB coordinates for domain 2r85A01

PDB 2r85, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.20 Gene3D
3.40.50.20.6
3.40.50.20.6.1
3.40.50.20.6.1.1
3.40.50.20.6.1.1.1
3.40.50.20.6.1.1.1.1

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Segment boundaries for domain 2r85A01

Chopping figure for domain 2r85A01
DomainStart PDB ResidueStop PDB Residue
2r85A01 1 87
2r85A02 88 115
2r85A02 178 334
2r85A03 116 177

Structural Neighbourhood (45 entries)

There are 45 matching structural neighberhood comparisons for CATH ID 3.40.50.20.6.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 45 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2r7kA01 88.07 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase [EC:6.3.4.-]Purine metabolismMethanocaldococcus jannaschii5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetaseMetabolic pathways 3.40.50.20 111 44 77 1.22 1.57
1dv1B01 83.80 Pyruvate metabolismFatty acid biosynthesisPropanoate metabolismMetabolic pathwaysFatty acid biosynthetic process 3.40.50.20 85 21 81 2.44 2.99
2x5oA01 80.56 D-Glutamine and D-glutamate metabolismPeptidoglycan biosynthesisMetabolic pathwaysUDP-N-acetylmuramoylalanine--D-glutamate ligaseUDP-N-acetylmuramoylalanine-D-glutamate ligase activity 3.40.50.720 92 8 84 2.86 3.37
3eagA01 79.76 UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.-]Neisseria meningitidis serogroup BUDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 3.40.50.720 88 14 93 3.34 3.58
1vkzA01 79.65 Thermotoga maritimaPhosphoribosylamine--glycine ligase [EC:6.3.4.13]Purine metabolismPhosphoribosylamine--glycine ligaseMetabolic pathways 3.40.50.20 77 15 80 2.61 3.24
1v71A02 79.33 Serine racemaseSchizosaccharomyces pombe 3.40.50.1100 97 13 72 2.52 3.49
1p3dA01 78.96 D-Glutamine and D-glutamate metabolismUDP-N-acetylmuramate--L-alanine ligaseUDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]Haemophilus influenzaePeptidoglycan biosynthesis 3.40.50.720 87 13 91 3.59 3.90
1p5jA02 77.87 Protein homodimerization activityL-serine ammonia-lyase activityGlycine, serine and threonine metabolismPyruvate biosynthetic processMetabolic pathways 3.40.50.1100 96 6 72 2.95 4.05
1j6uA01 77.78 D-Glutamine and D-glutamate metabolismThermotoga maritimaUDP-N-acetylmuramate--L-alanine ligaseUDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]Peptidoglycan biosynthesis 3.40.50.720 85 9 88 3.69 4.17
1ulzA01 77.53 Pyruvate carboxylase subunit A [EC:6.4.1.1]Citrate cycle (TCA cycle)Pyruvate metabolismPyruvate carboxylase n-terminal domainAquifex aeolicus 3.40.50.20 129 16 65 3.25 4.99
1m1nB03 77.48 Nitrogenase molybdenum-iron protein beta chain [EC:1.18.6.1]Nitrogen metabolismAzotobacter vinelandiiNitrogenase molybdenum-iron protein beta chainMetabolic pathways 3.40.50.1980 106 9 71 3.22 4.49
2vheA01 77.15 Campylobacter jejuniAcetyltransferase 3.40.50.20 75 16 77 3.30 4.29
1mioB04 76.89 Nitrogenase molybdenum-iron protein beta chainClostridium pasteurianum 3.40.50.1980 98 6 75 3.43 4.54
1j0aA02 76.82 1-aminocyclopropane-1-carboxylate deaminase [EC:3.5.99.7]Pyrococcus horikoshiiPropanoate metabolismPutative 1-aminocyclopropane-1-carboxylate deaminase 3.40.50.1100 104 14 66 3.20 4.82
1pjqA01 76.37 Porphyrin and chlorophyll metabolismSalmonella enterica subsp. enterica serovar TyphimuriumSiroheme synthaseUroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]Metabolic pathways 3.40.50.720 112 5 75 3.49 4.65
1f8fA02 76.35 Acinetobacter calcoaceticusBenzyl alcohol dehydrogenase 3.40.50.720 137 17 58 2.47 4.23
3fpcA02 76.03 Entamoeba histolyticaNADP-dependent alcohol dehydrogenase 3.40.50.720 130 17 61 2.84 4.62
1ve1A02 75.75 Thermus thermophilus HB8Cysteine synthase A [EC:2.5.1.47]Selenoamino acid metabolismCysteine synthaseSulfur metabolism 3.40.50.1100 108 6 62 2.54 4.03
2ho3A01 75.59 Oxidoreductase, Gfo/Idh/MocA familyStreptococcus pneumoniae 3.40.50.720 113 3 69 2.69 3.85
2aefA01 75.45 Methanothermobacter thermautotrophicus str. Delta HCalcium-gated potassium channel mthK 3.40.50.720 115 12 69 2.93 4.21
1piwA02 75.38 NADP-dependent alcohol dehydrogenase 6Alcohol dehydrogenase (NADP+) activityAlcohol metabolic processHydroxymethylfurfural reductase (NADH) activitySoluble fraction 3.40.50.720 137 14 59 2.54 4.24
1lluA02 75.37 Tyrosine metabolismFatty acid metabolism1- and 2-Methylnaphthalene degradationMetabolic pathwaysMetabolism of xenobiotics by cytochrome P450 3.40.50.720 138 11 58 2.90 4.94
1h2bA02 75.34 Tyrosine metabolismFatty acid metabolism1- and 2-Methylnaphthalene degradationMetabolic pathwaysAeropyrum pernix 3.40.50.720 140 11 57 2.45 4.23
1efdN01 75.32 ABC transportersIron(3+)-hydroxamate-binding protein fhuDIron complex transport system substrate-binding proteinEscherichia coli K-12 3.40.50.1980 91 9 80 3.86 4.81
1sr8A03 74.95 Porphyrin and chlorophyll metabolismArchaeoglobus fulgidusCobalamin biosynthesis protein CbiDPutative cobalt-precorrin-6A synthase [deacetylating]Metabolic pathways 3.40.50.10720 90 8 70 3.23 4.61
1vj0A02 74.90 Butanoate metabolismThermotoga maritima[EC:1.1.1.-]Alcohol dehydrogenase, zinc-containingFructose and mannose metabolism 3.40.50.720 147 9 53 2.55 4.74
1bxrA05 74.68 3.40.50.20 140 14 59 2.53 4.27
2pfsA01 74.43 Universal stress protein (Usp)Nitrosomonas europaeaUniversal stress protein A 3.40.50.620 114 9 72 3.22 4.42
1a9xA08 74.38 3.40.50.1380 106 10 77 3.33 4.30
1ydwA01 73.82 Arabidopsis thalianaUncharacterized oxidoreductase At4g09670 3.40.50.720 124 8 66 2.65 3.96
1dljA02 73.72 Amino sugar and nucleotide sugar metabolismStarch and sucrose metabolismPentose and glucuronate interconversionsAscorbate and aldarate metabolismMetabolic pathways 3.40.50.1870 108 8 68 3.08 4.50
1lssA00 73.36 Trk system potassium uptake protein TrkATrk system potassium uptake protein trkA homologMethanocaldococcus jannaschii 3.40.50.720 132 6 62 2.99 4.76
1ep3B02 73.21 Lactococcus lactis subsp. cremoris MG1363Dihydroorotate dehydrogenase electron transfer subunitProtein bindingDihydroorotate dehydrogenase electron transfer subunit 3.40.50.80 117 9 70 3.27 4.67
1mb3A00 73.17 Caulobacter vibrioidesTwo-component systemTwo-component system, cell cycle response regulator DivKPolar differentiation response regulatorCell cycle - Caulobacter 3.40.50.2300 115 6 53 2.57 4.77
1ltqA02 72.72 Polynucleotide kinaseEnterobacteria phage T4 3.40.50.1000 136 6 56 2.68 4.73
1xeaA01 72.60 Vibrio choleraeOxidoreductase, Gfo/Idh/MocA familyVirulence factor 3.40.50.720 117 11 67 3.00 4.44
3fdxA00 72.44 Putative uncharacterized protein ynaFKlebsiella pneumoniae subsp. pneumoniae MGH 78578 3.40.50.620 121 11 71 3.53 4.97
3cg0A00 72.44 Desulfovibrio desulfuricans subsp. desulfuricans str. G20Response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor 3.40.50.2300 121 6 52 2.53 4.78
1cdzA00 72.41 DNA repair protein XRCC1Homo sapiensProtein binding 3.40.50.10190 96 4 56 2.79 4.96
1n2zA01 72.34 ABC transportersPeriplasmic spaceVitamin B12-binding proteinCobalamin bindingVitamin B12 transport system substrate-binding protein 3.40.50.1980 119 8 62 2.95 4.74
1iz0A02 72.05 NADPH2:quinone reductase [EC:1.6.5.5]Probable quinone oxidoreductaseThermus thermophilus 3.40.50.720 152 12 50 2.37 4.68
3bwvA01 71.95 Putative 5'(3')-deoxyribonucleotidaseStaphylococcus epidermidis ATCC 12228 3.40.50.1000 121 14 62 2.82 4.49
2qzjA00 71.73 Two-component response regulatorClostridium difficile 630 3.40.50.2300 119 3 53 2.64 4.91
2hmtA00 71.62 Trk system potassium uptake protein TrkABacillus subtilisKtr system potassium uptake protein A 3.40.50.720 139 11 59 2.85 4.77
2jbaA00 70.73 Two-component systemPhosphate regulon transcriptional regulatory protein phoBTwo-component system, OmpR family, phosphate regulon response regulator PhoBProtein bindingEscherichia coli K-12 3.40.50.2300 125 6 51 2.51 4.90
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Displaying entries 1 to 45 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2r85A01
MKVRIATYASHSALQILKGAKDEGFETIAFGSSKVKPLYTKYFPVADYFIEEKYPEEELLNLNAVVVPTGSFVAHLGIEL
VENMKVP
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2r85A01
MKVRIATYASHSALQILKGAKDEGFETIAFGSSKVKPLYTKYFPVADYFIEEKYPEEELLNLNAVVVPTGSFVAHLGIEL
VENMKVP
BLAST against CATH

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Domain History Events (15)

Domain assigned by auto on 13 Jan 2009 12:07

Assigning to "3.40.50.20" based on similarity with "2r85B01"

Flow stage update by auto on 13 Jan 2009 12:06

No in_process hits for Domain "2r85A01" ready to be processed

Update comment by auto on 13 Jan 2009 12:03

Domain "2r85A01" hits Domain "2r87E01" (100% over 100%) which is currently in process

Update comment by auto on 13 Jan 2009 12:01

Domain "2r85A01" hits Domain "2r84A01" (100% over 100%) which is currently in process

Update comment by auto on 13 Jan 2009 11:59

Domain "2r85A01" hits Domain "2r85B01" (100% over 100%) which is currently in process

Update comment by auto on 13 Jan 2009 11:56

Domain "2r85A01" hits Domain "2r84B01" (100% over 100%) which is currently in process

Update comment by auto on 13 Jan 2009 11:54

Domain "2r85A01" hits Domain "2r7kA01" (44.8275862068966% over 77.4774774774775%) which is currently in process

Update comment by auto on 13 Jan 2009 11:51

Domain "2r85A01" hits Domain "2r7lA01" (44.8275862068966% over 77.4774774774775%) which is currently in process

Update comment by auto on 13 Jan 2009 11:37

Domain "2r85A01" hits Domain "2r7nA01" (44.8275862068966% over 77.4774774774775%) which is currently in process

Update comment by auto on 23 Sep 2008 23:19

Domain "2r85A01" hits Domain "2r7mA01" (44.8275862068966% over 77.4774774774775%) which is currently in process

Flow stage update by auto on 23 Sep 2008 23:17

Domain "2r85A01" hits Domain "2r7mA01" (44.8275862068966% over 77.4774774774775%) which is currently in process

Flow stage update by auto on 23 Sep 2008 23:17

NW result present for Domain "2r85A01"

Flow stage update by auto on 23 Sep 2008 08:17

All required files are present for Domain "2r85A01"

Flow stage update by auto on 22 Sep 2008 15:12

Beginning processing for Domain "2r85A01"

Insertion by auto on 22 Sep 2008 14:39

Final ChopClose added based on similarity with "2r84A"