CATH Domain: 2r2cB00 XML data for domain: 2r2cB00

Molscript image for 2r2cB00
2r2cB00
PDB coordinates for domain 2r2cB00

PDB 2r2c, Chain B, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.60 Sandwich
2.60.40 Immunoglobulin-like
2.60.40.320 Gene3D
2.60.40.320.3
2.60.40.320.3.1
2.60.40.320.3.1.1
2.60.40.320.3.1.1.1
2.60.40.320.3.1.1.1.1

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Segment boundaries for domain 2r2cB00

Chopping figure for domain 2r2cB00
DomainStart PDB ResidueStop PDB Residue
2r2cB00 53 180

Structural Neighbourhood (13 entries)

There are 13 matching structural neighberhood comparisons for CATH ID 2.60.40.320.3.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 13 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
3cmgA02 81.44 2.60.40.320 118 7 81 2.79 3.43
3bgaA02 80.14 Galactose metabolismGlycan structures - degradationSphingolipid metabolismGlycosaminoglycan degradationBacteroides thetaiotaomicron 2.60.40.320 111 7 83 3.09 3.69
2pr9A02 79.48 Protein bindingIntracellular transport vesiclesRattus norvegicusEukaryotic plasma membrane / membrane attachedProtein targeting, sorting and translocation 2.60.40.1170 112 6 78 3.92 4.99
3bgaA04 79.45 Galactose metabolismGlycan structures - degradationGlycosaminoglycan degradationSphingolipid metabolismBacteroides thetaiotaomicron 2.60.40.320 105 6 85 2.93 3.41
1im3D00 77.76 Unique short US2 glycoproteinHuman herpesvirus 5 strain AD169 2.60.40.1200 95 4 82 3.52 4.28
1bhgA02 77.67 Carbohydrate metabolic processBeta-glucuronidase activityHomo sapiensBeta-glucuronidase precursorGlycosaminoglycan catabolic process 2.60.40.320 104 10 81 3.88 4.77
2w07A01 77.50 Periplasmid chaperone PapD proteinEscherichia coli UTI89 2.60.40.360 121 5 82 4.01 4.85
1xvsA00 77.35 Vibrio choleraeProtein apaGApaG protein 2.60.40.1470 120 10 82 3.74 4.53
1ze3C01 77.10 Outer membrane usher protein fimD precursorEscherichia coli K12Outer membrane usher protein 2.60.40.360 117 7 83 4.16 4.97
1f00I01 77.07 2.60.40.920 95 15 83 3.94 4.74
1ifrA00 76.62 NucleusStructural protein bindingLamin-A/CHomo sapiensIntermediate filaments 2.60.40.1260 113 6 67 3.04 4.52
1nepA00 74.64 Bos taurusEpididymal secretory protein E1 precursor 2.60.40.770 130 7 74 3.57 4.78
3cmgA04 74.28 2.60.40.1560 87 10 70 3.46 4.94
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Displaying entries 1 to 13 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2r2cB00
AKINIFAVAEYTDTQKIKVTVKGKILEGNTLPKSVQVYLLEDHVLRGAVNGIWGEEFVNLKDYLYTYAVEPLSGSFVAEN
YSIVAFVYDVQTFEVYDVVHVKINPQS
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2r2cB00
AKINIFAVAEYTDTQKIKVTVKGKILEGNTLPKSXVQVYLLEDKLIAPQVDGNTTVENYEHNHVLRGAVNGIWGEEFVNL
KDYLYTYAVEPLSGXSFVAENYSIVAFVYDVQTFEVYDVVHVKINPQSDGK
BLAST against CATH

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Domain History Events (8)

Domain assigned by auto on 03 Mar 2009 21:15

Assigning to "2.60.40.320" based on similarity with "2r2cA00"

Flow stage update by auto on 03 Mar 2009 21:00

No in_process hits for Domain "2r2cB00" ready to be processed

Update comment by auto on 23 Sep 2008 20:17

Domain "2r2cB00" hits Domain "2r2cA00" (98.4732824427481% over 88.5135135135135%) which is currently in process

Flow stage update by auto on 23 Sep 2008 20:15

Domain "2r2cB00" hits Domain "2r2cA00" (98.4732824427481% over 88.5135135135135%) which is currently in process

Flow stage update by auto on 23 Sep 2008 20:15

NW result present for Domain "2r2cB00"

Flow stage update by auto on 23 Sep 2008 08:17

All required files are present for Domain "2r2cB00"

Flow stage update by auto on 22 Sep 2008 15:12

Beginning processing for Domain "2r2cB00"

Insertion by auto on 22 Sep 2008 14:04

Final ChopClose added based on similarity with "2r2cA"