CATH Domain: 2qmxA03 XML data for domain: 2qmxA03

Molscript image for 2qmxA03
2qmxA03
PDB coordinates for domain 2qmxA03

PDB 2qmx, Chain A, Domain 3

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.70 Alpha-Beta Plaits
3.30.70.260 Gene3D
3.30.70.260.14
3.30.70.260.14.1
3.30.70.260.14.1.1
3.30.70.260.14.1.1.1
3.30.70.260.14.1.1.1.1

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Segment boundaries for domain 2qmxA03

Chopping figure for domain 2qmxA03
DomainStart PDB ResidueStop PDB Residue
2qmxA01 3 81
2qmxA01 168 178
2qmxA02 82 167
2qmxA03 190 280

Structural Neighbourhood (40 entries)

There are 40 matching structural neighberhood comparisons for CATH ID 3.30.70.260.14.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 40 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2nzcA00 83.83 Thermotoga maritimaPutative uncharacterized protein 3.30.70.1150 77 6 83 2.86 3.43
1q5yD00 83.24 CopG family transcriptional regulator, nickel-responsive regulatorNickel-responsive regulatorProtein bindingEscherichia coli K-12 3.30.70.1150 80 8 85 2.77 3.24
2rhsD06 82.38 Aminoacyl-tRNA biosynthesisStaphylococcus haemolyticus JCSC1435Phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]Phenylalanyl-tRNA synthetase beta chain 3.30.70.380 88 9 81 2.44 3.01
1u0sA00 81.00 Thermotoga maritimaBacterial chemotaxisTwo-component systemTwo-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]Protein binding 3.30.70.1110 86 6 80 2.69 3.36
1vr6A01 80.87 Phenylalanine, tyrosine and tryptophan biosynthesisMetabolic pathwaysThermotoga maritima3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]Phospho-2-dehydro-3-deoxyheptonate aldolase 3.30.70.1140 75 4 77 3.50 4.50
2x3dF01 80.54 Hypothetical proteinSulfolobus solfataricusPutative uncharacterized protein 3.30.70.1340 84 8 90 3.52 3.91
1i1gA02 80.09 Pyrococcus furiosusHTH-type transcriptional regulator lrpALrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA 3.30.70.920 77 6 78 3.44 4.36
2epiB00 79.43 Methanocaldococcus jannaschiiUPF0045 protein MJ1052 3.30.70.930 96 4 77 3.77 4.89
1rlhA02 78.94 Putative uncharacterized protein Ta1353Thermoplasma acidophilum 3.40.1520.10 101 10 73 3.31 4.52
1s99A02 78.92 Bacillus subtilisPutative HMP/thiamine-binding protein ykoF 3.30.70.930 81 12 81 3.45 4.25
2pehA01 78.85 Splicing factor 45SpliceosomeHomo sapiensProtein bindingSplicing factor 45 3.30.70.330 83 3 78 3.42 4.34
2do0A01 78.54 Protein domain specific bindingIntegral to plasma membraneParaspecklesAlternative nuclear mRNA splicing, via spliceosomeHeterogeneous nuclear ribonucleoprotein M 3.30.70.330 76 7 77 3.54 4.55
3cedA00 78.48 ABC transportersD-methionine transport system ATP-binding proteinMethionine import ATP-binding protein MetN 2Staphylococcus aureus subsp. aureus Mu50 3.30.70.260 97 7 86 3.88 4.48
1nzaA00 78.35 Thermus thermophilus HB8Divalent-cation tolerance protein cutAPeriplasmic divalent cation tolerance protein 3.30.70.830 103 7 75 3.43 4.53
2nuhA00 78.30 Xylella fastidiosaPeriplasmic divalent cation tolerance proteinPeriplasmic divalent cation tolerance protein 3.30.70.830 104 8 75 3.51 4.62
1in0A01 78.02 Hypothetical proteinHaemophilus influenzaeUPF0234 protein HI_1034 3.30.70.860 70 5 72 3.39 4.69
1pytA00 77.88 Bos taurusCarboxypeptidase A1 [EC:3.4.17.1]Carboxypeptidase A1 3.30.70.340 94 3 81 3.71 4.53
1jmtA00 77.74 Spliceosomal complexSplicing factor U2AF 35 kDa subunitCajal bodyHomo sapiensProtein binding 3.30.70.330 98 5 74 3.55 4.77
2fb0A00 77.68 Bacteroides thetaiotaomicronPutative uncharacterized protein 3.30.70.900 91 8 84 3.72 4.40
2gx8C02 77.42 Bacillus cereus ATCC 14579NIF3-related protein 3.30.70.830 102 11 81 3.56 4.37
1jqgA01 77.41 Carboxypeptidase AHelicoverpa armigera 3.30.70.340 91 4 82 3.92 4.76
2od4B01 77.27 3.30.70.900 81 2 76 3.33 4.34
1wj9A01 77.25 Thermus thermophilus HB8Putative uncharacterized protein TTHB192 3.30.70.1200 87 10 80 3.39 4.24
3c19A01 77.19 Methanopyrus kandleriUncharacterized conserved protein 3.30.70.1380 98 11 91 4.09 4.45
1j27A00 77.14 Hypothetical proteinThermus thermophilusPutative uncharacterized protein 3.30.70.1120 98 7 81 3.63 4.45
1x5oA01 77.13 RNA processingHomo sapiensProtein bindingRNA-binding motif, single-stranded-interacting protein 1 3.30.70.330 86 4 80 3.97 4.96
1uw4A00 76.95 Regulator of nonsense transcripts 3BNuclear-transcribed mRNA catabolic process, nonsense-mediated decayHomo sapiensProtein binding 3.30.70.330 90 6 84 4.04 4.78
2pd1A01 76.85 Nitrosomonas europaeaPutative uncharacterized protein 3.30.70.900 93 3 82 3.40 4.11
1nsaA01 76.82 Sus scrofaCarboxypeptidase B [EC:3.4.17.2]Carboxypeptidase B 3.30.70.340 92 10 80 3.47 4.31
1yqhB00 76.71 IG hypothetical 16092Bacillus cereus ATCC 14579 3.30.70.930 98 6 72 3.30 4.55
2hiyB01 76.33 Streptococcus pneumoniaePutative uncharacterized protein 3.30.70.1280 87 5 80 3.87 4.84
1ayeA01 76.18 Carboxypeptidase A2 [EC:3.4.17.15]Homo sapiensMetallocarboxypeptidase activityVacuolar protein catabolic processCarboxypeptidase A2 3.30.70.340 99 8 78 3.69 4.68
1s99A01 76.16 Bacillus subtilisPutative HMP/thiamine-binding protein ykoF 3.30.70.930 77 7 77 3.38 4.35
1vk8A00 75.93 Thermotoga maritimaPutative uncharacterized protein 3.30.70.930 91 13 78 3.63 4.65
1mwqA00 75.68 Hypothetical proteinHaemophilus influenzaeUncharacterized protein HI_0828 3.30.70.1060 98 12 81 3.95 4.84
2iboA00 75.56 Streptococcus pneumoniaePutative uncharacterized protein 3.30.70.930 87 8 80 3.90 4.88
3ifeA02 75.26 Bacillus anthracisPeptidase TTripeptide aminopeptidase [EC:3.4.11.4] 3.30.70.360 109 1 67 3.03 4.46
1kn6A00 74.51 Mus musculusPeptide hormone processingSerine-type endopeptidase activityNeuroendocrine convertase 1Proprotein convertase subtilisin/kexin type 1 [EC:3.4.21.93] 3.30.70.850 73 12 75 3.63 4.80
2bopA00 74.07 Regulatory protein E2Bovine papillomavirus type 1 3.30.70.330 85 5 84 4.04 4.78
2vqeJ00 72.83 RibosomeThermus thermophilus HB8Small subunit ribosomal protein S1030S ribosomal protein S10 3.30.70.600 98 10 75 3.30 4.37
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Displaying entries 1 to 40 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2qmxA03
RPDVARQKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFIGHREDQNVHNALENLREFATVK
VLGSYGVVNP
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2qmxA03
RPDVARQKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFIGHREDQNVHNALENLREFATXV
KVLGSYGVVNP
BLAST against CATH

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Domain History Events (8)

Domain assigned by auto on 06 Jan 2009 20:58

Assigning to "3.30.70.260" based on similarity with "2qmxB03"

Flow stage update by auto on 06 Jan 2009 20:39

No in_process hits for Domain "2qmxA03" ready to be processed

Update comment by auto on 14 Sep 2008 17:14

Domain "2qmxA03" hits Domain "2qmxB03" (98.9010989010989% over 100%) which is currently in process

Flow stage update by auto on 14 Sep 2008 17:11

Domain "2qmxA03" hits Domain "2qmxB03" (98.9010989010989% over 100%) which is currently in process

Flow stage update by auto on 14 Sep 2008 17:11

NW result present for Domain "2qmxA03"

Flow stage update by auto on 11 Sep 2008 11:06

All required files are present for Domain "2qmxA03"

Flow stage update by auto on 10 Sep 2008 17:44

Beginning processing for Domain "2qmxA03"

Insertion by cuff on 10 Sep 2008 12:15

nice chopping